RNA id: TU230641


Basic Information

Item Value
RNA id TU230641
length 564
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G203219
representative False

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 4545569 ~ 4546216 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCAACTCTTCTGGGAAGGCTTTCCACAAGGTTTAGGAGTGTGTTTATGGGAATTTTTGACCATTCTTCTAGAAGCGCATTTGTGAGGTCAGGCAGTGATGTTGGACGAGAAGGCCTGGCTCGCAGTCTCCGCTCTAATTCATCCCAAAGGTGTTCTATCGGGTTGAGGTCAGGACTCTGTGCAGGCCAGTCAAGTTCCTCCACACCAAACTCGCTCATCCATGTCTTTATGGACCTTGCTTTGTGCACTGGTCATGTTGGAACAGGAAGGGGCCATCCCCAAACTGTTCCCACAAAGTTGGGAGCATGAAATTGTCCAAAATGTCTTGGTATGCTGAAGCATTAAGAGTTCCTTTCACTGGAACTAAGGGGCCAAGCCCAACCCCTGAAAAACAACCCCACACCATAATCCCCCTCCACCAAACTTTACACTTGGCACAACGCAGTCAGGCAAGTGCCGTTCTCCTGGCAACCGCCAAACCCAGACTCGTCCATCGGATTGCCAGACAGAGAAGCGTGATTCGTCACTCCAGAGAACACGTCTCCACTGCTCTAGAGTCCAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230636 lncRNA downstream 8999 4536341 ~ 4536570 (-) True G203217
TU230623 lncRNA downstream 43047 4502205 ~ 4502522 (-) True G203204
TU230610 lncRNA downstream 120210 4420159 ~ 4425359 (-) True G203191
TU230607 lncRNA downstream 136742 4408541 ~ 4408827 (-) True G203189
TU230606 lncRNA downstream 136804 4408473 ~ 4408765 (-) False G203189
TU230644 lncRNA upstream 3888 4550020 ~ 4550257 (-) True G203221
TU230686 lncRNA upstream 255765 4801897 ~ 4802226 (-) True G203258
TU230732 lncRNA upstream 336521 4882653 ~ 4882903 (-) True G203298
TU230758 lncRNA upstream 389374 4935506 ~ 4948267 (-) True G203323
TU230737 lncRNA upstream 428164 4974296 ~ 4978735 (-) True G203303
CI01000047_04479638_04501854.mRNA mRNA downstream 43596 4479241 ~ 4501973 (-) True CI01000047_04479638_04501854
CI01000047_04458864_04461672.mRNA mRNA downstream 83475 4458771 ~ 4462094 (-) True CI01000047_04458864_04461672
CI01000047_04398951_04431817.mRNA mRNA downstream 113752 4398951 ~ 4431817 (-) True CI01000047_04398951_04431817
CI01000047_04385029_04397861.mRNA mRNA downstream 147708 4384547 ~ 4397861 (-) True CI01000047_04385029_04397861
CI01000047_04345335_04375341.mRNA mRNA downstream 170135 4345127 ~ 4375434 (-) True CI01000047_04345335_04375341
CI01000047_04555399_04568166.mRNA mRNA upstream 8690 4554822 ~ 4568320 (-) True CI01000047_04555399_04568166
CI01000047_04575184_04576337.mRNA mRNA upstream 28859 4574991 ~ 4576337 (-) False CI01000047_04575184_04576337
CI01000047_04589853_04594533.mRNA mRNA upstream 43638 4589770 ~ 4594636 (-) True CI01000047_04589853_04594533
CI01000047_04596548_04605172.mRNA mRNA upstream 49848 4595980 ~ 4605172 (-) True CI01000047_04596548_04605172
CI01000047_04613815_04652751.mRNA mRNA upstream 67683 4613815 ~ 4652751 (-) True CI01000047_04613815_04652751
TU230539 other downstream 258888 4278908 ~ 4278976 (-) True G203126
TU230541 other downstream 331139 4214294 ~ 4214430 (-) True G203128
TU230337 other downstream 559167 3985342 ~ 3986402 (-) True G202944
TU230047 other downstream 1411917 3132313 ~ 3133652 (-) False G202733
TU230543 other upstream 28203 4576786 ~ 4576965 (-) True G203130
TU230719 other upstream 328247 4874379 ~ 4876734 (-) True G203286
TU231342 other upstream 1372376 5918508 ~ 5927344 (-) True G203840
TU231390 other upstream 1497121 6043253 ~ 6043789 (-) True G203881

Expression Profile