RNA id: TU228832


Basic Information

Item Value
RNA id TU228832
length 245
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G201641
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 4545893 ~ 4546137 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGCAAGGTCCATAAAGACATGGATGAGCGAGTTTGGTGTGGAGGAACTTGACTGGCCTGCACAGAGTCCTGACCTCAACCCGATAGAACACCTTTGGGATGAATTAGAGCGGAGACTGCGAGCCAGGCCTTCTCGTCCAACATCACTGCCTGACCTCACAAATGCGCTTCTAGAAGAATGGTCAAAAATTCCCATAAACACACTCCTAAACCTTGTGGAAAGCCTTCCCAGAAGAGTTGAGGCTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228830 lncRNA upstream 5392 4540299 ~ 4540501 (+) True G201639
TU228773 lncRNA upstream 65115 4478351 ~ 4480778 (+) True G201599
TU228799 lncRNA upstream 120478 4420184 ~ 4425415 (+) True G201613
TU228795 lncRNA upstream 137121 4408518 ~ 4408772 (+) True G201609
TU228728 lncRNA upstream 196119 4286779 ~ 4349774 (+) True G201555
TU228833 lncRNA downstream 1115 4547252 ~ 4547455 (+) True G201642
TU228786 lncRNA downstream 27231 4573368 ~ 4596630 (+) True G201600
TU228793 lncRNA downstream 28198 4574335 ~ 4576940 (+) True G201607
TU228791 lncRNA downstream 54161 4600298 ~ 4603661 (+) True G201605
TU228856 lncRNA downstream 73814 4619951 ~ 4623509 (+) True G201658
CI01000047_04471595_04476690.mRNA mRNA upstream 68676 4471125 ~ 4477217 (+) True CI01000047_04471595_04476690
CI01000047_04222867_04253291.mRNA mRNA upstream 292182 4222682 ~ 4253711 (+) True CI01000047_04222867_04253291
CI01000047_04214987_04217836.mRNA mRNA upstream 327416 4214987 ~ 4218477 (+) True CI01000047_04214987_04217836
CI01000047_04198702_04207295.mRNA mRNA upstream 338488 4198702 ~ 4207405 (+) True CI01000047_04198702_04207295
CI01000047_04183386_04192887.mRNA mRNA upstream 352867 4183386 ~ 4193026 (+) True CI01000047_04183386_04192887
CI01000047_04582184_04586359.mRNA mRNA downstream 35867 4582004 ~ 4586796 (+) True CI01000047_04582184_04586359
CI01000047_04606043_04610846.mRNA mRNA downstream 59906 4606043 ~ 4611322 (+) True CI01000047_04606043_04610846
CI01000047_04663268_04663847.mRNA mRNA downstream 116178 4662315 ~ 4663996 (+) True CI01000047_04663268_04663847
CI01000047_04678392_04690824.mRNA mRNA downstream 131855 4677992 ~ 4691097 (+) True CI01000047_04678392_04690824
CI01000047_04826817_04834995.mRNA mRNA downstream 280680 4826817 ~ 4835216 (+) True CI01000047_04826817_04834995
TU228781 other upstream 63436 4415813 ~ 4482457 (+) False G201599
TU228535 other upstream 844033 3696516 ~ 3701860 (+) True G201387
TU228278 other upstream 1457706 3018705 ~ 3088187 (+) True G201186
TU227053 other upstream 1967896 2520596 ~ 2577997 (+) True G200076
TU226970 other upstream 2226931 2316863 ~ 2318962 (+) True G200003
TU229634 other downstream 2269580 6815717 ~ 6816118 (+) True G202382

Expression Profile