Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU228856 |
| length | 1257 |
| lncRNA type | antisense_over |
| GC content | 0.57 |
| exon number | 6 |
| gene id | G201658 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000047 |
| NCBI id | null |
| chromosome length | 7523058 |
| location | 4619951 ~ 4623509 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU228791 | lncRNA | upstream | 16290 | 4600298 ~ 4603661 (+) | True | G201605 |
| TU228786 | lncRNA | upstream | 23321 | 4573368 ~ 4596630 (+) | True | G201600 |
| TU228793 | lncRNA | upstream | 43011 | 4574335 ~ 4576940 (+) | True | G201607 |
| TU228833 | lncRNA | upstream | 72496 | 4547252 ~ 4547455 (+) | True | G201642 |
| TU228832 | lncRNA | upstream | 73814 | 4545893 ~ 4546137 (+) | True | G201641 |
| TU228868 | lncRNA | downstream | 24870 | 4648379 ~ 4724087 (+) | True | G201669 |
| TU228883 | lncRNA | downstream | 60822 | 4684331 ~ 4685358 (+) | True | G201684 |
| TU228897 | lncRNA | downstream | 108817 | 4732326 ~ 4733589 (+) | True | G201698 |
| TU228977 | lncRNA | downstream | 164425 | 4787934 ~ 4788563 (+) | True | G201773 |
| TU229003 | lncRNA | downstream | 287777 | 4911286 ~ 4912745 (+) | True | G201799 |
| CI01000047_04606043_04610846.mRNA | mRNA | upstream | 8629 | 4606043 ~ 4611322 (+) | True | CI01000047_04606043_04610846 |
| CI01000047_04582184_04586359.mRNA | mRNA | upstream | 33155 | 4582004 ~ 4586796 (+) | True | CI01000047_04582184_04586359 |
| CI01000047_04471595_04476690.mRNA | mRNA | upstream | 142734 | 4471125 ~ 4477217 (+) | True | CI01000047_04471595_04476690 |
| CI01000047_04222867_04253291.mRNA | mRNA | upstream | 366240 | 4222682 ~ 4253711 (+) | True | CI01000047_04222867_04253291 |
| CI01000047_04214987_04217836.mRNA | mRNA | upstream | 401474 | 4214987 ~ 4218477 (+) | True | CI01000047_04214987_04217836 |
| CI01000047_04663268_04663847.mRNA | mRNA | downstream | 38806 | 4662315 ~ 4663996 (+) | True | CI01000047_04663268_04663847 |
| CI01000047_04678392_04690824.mRNA | mRNA | downstream | 54483 | 4677992 ~ 4691097 (+) | True | CI01000047_04678392_04690824 |
| CI01000047_04826817_04834995.mRNA | mRNA | downstream | 203308 | 4826817 ~ 4835216 (+) | True | CI01000047_04826817_04834995 |
| CI01000047_04845691_04876128.mRNA | mRNA | downstream | 222182 | 4845691 ~ 4876128 (+) | True | CI01000047_04845691_04876128 |
| CI01000047_04890965_04891981.mRNA | mRNA | downstream | 267456 | 4890965 ~ 4892131 (+) | True | CI01000047_04890965_04891981 |
| TU228781 | other | upstream | 137494 | 4415813 ~ 4482457 (+) | False | G201599 |
| TU228535 | other | upstream | 918091 | 3696516 ~ 3701860 (+) | True | G201387 |
| TU228278 | other | upstream | 1531764 | 3018705 ~ 3088187 (+) | True | G201186 |
| TU227053 | other | upstream | 2041954 | 2520596 ~ 2577997 (+) | True | G200076 |
| TU226970 | other | upstream | 2300989 | 2316863 ~ 2318962 (+) | True | G200003 |
| TU229634 | other | downstream | 2192208 | 6815717 ~ 6816118 (+) | True | G202382 |
