RNA id: TU228883


Basic Information

Item Value
RNA id TU228883
length 307
lncRNA type intronic
GC content 0.42
exon number 3
gene id G201684
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 4684331 ~ 4685358 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCAAGGCAGTTGGACACAGTGGTGTATTAGAGATGGAGTTCCCATTGCCATGCATTATACGACTGACAGACGGCAACGGTTGGAGTTAAAAATCATCATTTGTGTTCTACTGAAGAAACAAAGTCACCTACATCTTGGATGCCCTGGGGATGTCTATGGAGGCATTTTTTCGGCATCGCCGGTGTGCTCCTGCCATGAAAGCTGACACAAAAGGTATCTTAATGATGCTGACTCGTAAGATAACTTGTTTTAGCAAAATTATAAAGGCAACACTGAATGTATCCTTAAATGAGAAGCCAATCCAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228856 lncRNA upstream 60822 4619951 ~ 4623509 (+) True G201658
TU228791 lncRNA upstream 80670 4600298 ~ 4603661 (+) True G201605
TU228786 lncRNA upstream 87701 4573368 ~ 4596630 (+) True G201600
TU228793 lncRNA upstream 107391 4574335 ~ 4576940 (+) True G201607
TU228833 lncRNA upstream 136876 4547252 ~ 4547455 (+) True G201642
TU228897 lncRNA downstream 46968 4732326 ~ 4733589 (+) True G201698
TU228977 lncRNA downstream 102576 4787934 ~ 4788563 (+) True G201773
TU229003 lncRNA downstream 225928 4911286 ~ 4912745 (+) True G201799
TU228924 lncRNA downstream 262272 4947630 ~ 4961291 (+) True G201722
TU228930 lncRNA downstream 276087 4961445 ~ 4965850 (+) True G201728
CI01000047_04663268_04663847.mRNA mRNA upstream 20335 4662315 ~ 4663996 (+) True CI01000047_04663268_04663847
CI01000047_04606043_04610846.mRNA mRNA upstream 73009 4606043 ~ 4611322 (+) True CI01000047_04606043_04610846
CI01000047_04582184_04586359.mRNA mRNA upstream 97535 4582004 ~ 4586796 (+) True CI01000047_04582184_04586359
CI01000047_04471595_04476690.mRNA mRNA upstream 207114 4471125 ~ 4477217 (+) True CI01000047_04471595_04476690
CI01000047_04222867_04253291.mRNA mRNA upstream 430620 4222682 ~ 4253711 (+) True CI01000047_04222867_04253291
CI01000047_04826817_04834995.mRNA mRNA downstream 141459 4826817 ~ 4835216 (+) True CI01000047_04826817_04834995
CI01000047_04845691_04876128.mRNA mRNA downstream 160333 4845691 ~ 4876128 (+) True CI01000047_04845691_04876128
CI01000047_04890965_04891981.mRNA mRNA downstream 205607 4890965 ~ 4892131 (+) True CI01000047_04890965_04891981
CI01000047_05058628_05074146.mRNA mRNA downstream 372985 5058343 ~ 5074374 (+) True CI01000047_05058628_05074146
CI01000047_05080583_05091592.mRNA mRNA downstream 393976 5079334 ~ 5091965 (+) True CI01000047_05080583_05091592
TU228781 other upstream 201874 4415813 ~ 4482457 (+) False G201599
TU228535 other upstream 982471 3696516 ~ 3701860 (+) True G201387
TU228278 other upstream 1596144 3018705 ~ 3088187 (+) True G201186
TU227053 other upstream 2106334 2520596 ~ 2577997 (+) True G200076
TU226970 other upstream 2365369 2316863 ~ 2318962 (+) True G200003
TU229634 other downstream 2130359 6815717 ~ 6816118 (+) True G202382

Expression Profile