RNA id: TU230719


Basic Information

Item Value
RNA id TU230719
length 966
RNA type TUCP
GC content 0.46
exon number 2
gene id G203286
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 4874379 ~ 4876734 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGGATGGTTGTGGTTTGCTATTGGTGGATCTCATGTGATTGACAGGTTGCCCCGCCCTCGCCATCAGAGATGTCGCTCAACAGTTGAATCAGTTATTCTGATTCAAGATTATGAGGGCACATGAATTTTAAAGGGGTCCTATTATGCTTTTTATGCTATTATGCATCACAATATTCCTCATTTAAATAATTAATACGCAGAATAAAGGGGCGGGGCCTGGCTGAGTTAGTTAGTAGTGTGTTGAAACTGGCGGTTATGGTAAGGGGCGGGACTTTTCCCCAAACACACTCAAAGCGCTTGACCAATCACAACACACTGCTCCAGCTGACCAATCAGAGCACATTGTGCTTTTCAGAAGGAGGGGCTTCATAGAGACAGGAACTAAACAGAGCGTTACTGACAGACTGGGAAGAGAGGAGCTGCAACAATGGAGAATATGAGGAAAATAATGTGTTTTTTAAACATGAAAACCTGTTCTAGTAGAGCACAAAAACAAAATCAAGACATTGTAAAATGGCATTATGTGACCTCATTTATAATAAATACTGCAATATTCCATTAAAAAACCCCCCAAGAACTGACCATTTTGATTTCATGGTGTCTAACCTGGAAAGCAGCGAACCACATGAGCCAGTCCAGTCTGTAGTGATACGGCGAGATGAGGCACGGCCTTCTATCCAGAGCTCCAGGTTTGCACAGGAACTCGTACTCCTCCCATTCCACGTCCTCTCCGGTGTGGTTGGCGCTCAGCGTGCCCTGAAACACCACCTCCGTCCGCTCCTTAGTGATAGTGGCCGGTGGTCTGTGTCCTGCGGCCTCCTCCGTCTGAATCTTTTGTAAAGTCTGTCTGGCTCCTCCAGAAGGGCGGAAGAGAAAAGCCAAAGCAGCATCATCGAAACAGGCCAGACTGGGAACTATAGTCAGCCAGTTCAGGAAACTCAGATTCCCACTGATGATCAGAACAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230686 lncRNA downstream 72153 4801897 ~ 4802226 (-) True G203258
TU230644 lncRNA downstream 324122 4550020 ~ 4550257 (-) True G203221
TU230642 lncRNA downstream 328163 4545736 ~ 4546216 (-) False G203219
TU230640 lncRNA downstream 328163 4545933 ~ 4546216 (-) True G203219
TU230638 lncRNA downstream 328247 4545736 ~ 4546132 (-) False G203219
TU230732 lncRNA upstream 5919 4882653 ~ 4882903 (-) True G203298
TU230758 lncRNA upstream 58772 4935506 ~ 4948267 (-) True G203323
TU230737 lncRNA upstream 97562 4974296 ~ 4978735 (-) True G203303
TU230792 lncRNA upstream 112423 4989157 ~ 4989456 (-) True G203355
TU230793 lncRNA upstream 114026 4990760 ~ 4990990 (-) True G203356
CI01000047_04840115_04844233.mRNA mRNA downstream 30146 4839563 ~ 4844233 (-) True CI01000047_04840115_04844233
CI01000047_04790377_04795864.mRNA mRNA downstream 78063 4790224 ~ 4796316 (-) True CI01000047_04790377_04795864
CI01000047_04703391_04706693.mRNA mRNA downstream 167686 4703038 ~ 4706693 (-) True CI01000047_04703391_04706693
CI01000047_04613815_04652751.mRNA mRNA downstream 221628 4613815 ~ 4652751 (-) True CI01000047_04613815_04652751
CI01000047_04596548_04605172.mRNA mRNA downstream 269207 4595980 ~ 4605172 (-) True CI01000047_04596548_04605172
CI01000047_05108733_05109209.mRNA mRNA upstream 231270 5108004 ~ 5109256 (-) True CI01000047_05108733_05109209
CI01000047_05151314_05157285.mRNA mRNA upstream 272985 5149719 ~ 5158394 (-) True CI01000047_05151314_05157285
CI01000047_05219313_05222967.mRNA mRNA upstream 342456 5219190 ~ 5222990 (-) True CI01000047_05219313_05222967
CI01000047_05235089_05236228.mRNA mRNA upstream 357410 5234144 ~ 5236273 (-) True CI01000047_05235089_05236228
CI01000047_05247473_05248489.mRNA mRNA upstream 370229 5246963 ~ 5248681 (-) True CI01000047_05247473_05248489
TU230543 other downstream 297414 4576786 ~ 4576965 (-) True G203130
TU230539 other downstream 587698 4278908 ~ 4278976 (-) True G203126
TU230541 other downstream 659949 4214294 ~ 4214430 (-) True G203128
TU230337 other downstream 887977 3985342 ~ 3986402 (-) True G202944
TU230047 other downstream 1740727 3132313 ~ 3133652 (-) False G202733
TU231342 other upstream 1041774 5918508 ~ 5927344 (-) True G203840
TU231390 other upstream 1166519 6043253 ~ 6043789 (-) True G203881

Expression Profile