RNA id: TU230737


Basic Information

Item Value
RNA id TU230737
length 3920
lncRNA type inter_gene
GC content 0.37
exon number 5
gene id G203303
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 4974296 ~ 4978735 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCTAATTTGACCATGTTTTCAGCTGCCAATAAGAGTGTGATACTCTCAGCTCTATTTAGCAGGCACAGATTCCGTCTGGGCCTGAAAAACGAGTGACTTACTTGGCCACAGCAGTGAAGGCCAACTCCACATTCAGACCTGATTTAGCACTGGTCTCCATGAAGGGAACGCCATACTCCTTAGCCAGTTTCTCACCCTCCTCTCTCTTCACAACCCTTTCATGTGTGGCATCAGCCTTGTTACCCAGAAGCATGATCACTACATTCTGCTGAGCGAACTCATGAATCTCTGTGAGCCAGGCCTGCGAAAAGAGAACAACTGACAGCAATTGTATTGTAAATTTACAAGAAATTACCATAATCTCAGATGCAGGACTTTAATTATTCTATATCTGGTTTAGGGTCCCAATACAGTTCACACTTGAATCCCTGGACAAGAAAGAAAAAAGCAATATTTTCCAATACTGCAAGAGAGGGCAGGTCATTTTAAGGAAAGTTTAATCAATAAAAATTGCTGGGGTGAATTTGCAGTCACCCTAGAAAAGAGATATAATAAGGAAAATGACATTCGGGAGAGGAGAGCGAGACAGAGAGGGTGATGAATCTCTGCGGACCTCAGCTTAATAAATGCCTCCTGTTAATATTAAGAGCAGGGAATCATAGCAGTAATAAAATTCAATGACACACAGTAAGGGTCAGACACTTCCCGAGTCTCGTAATCATCATCATCATCACCACCACAACACACAGACACACACACACACATTCAGAGTGCCATGCTCAATGATTAGAGATGTTGTTATTGCTCATACTACAGTTACTCCTAACCCTCAGTATGTCCTGCACCGTTTATAACTATAGGTGTCAATTATACCTTAAATCAGGGATTCACAAACCTTTTTGCCAGCTGAACCTGTTTTTATTTGATAAGACTTTAATTTTCCACTCGATATATAATGAATTATAATGTCAGAATTGTGAGATATAAACTCACAATTGTGAGAAATAAAGTCAGAATTGCGAGATATAAACTCACAATTGCGCATTATAAACTTGCAGTTGCGAGATATGTCAGAATTGCTATATAAACTCACAATTACGAAAAAATAAAGTCAGAATTGCTACATATAAACTCACAATTGCACATTATAAACTCAATTGTGAGAAATAGTCAGAATTGTGAGATATAATGTCAGAATTGCTAGATATTGGCCGGGTTTCACAGACAGGGCTTAGCCTAAGCCAGGATTAGGCCTTAGTTCAATTAGGGCATTTAAGTAGCTTTTATAAACTTTCACTAGAAAAAAACATTACTGGTGTACATCTTGAGACAAAACAATGGCAATGACATATTTTAAGATATGTTAGTACAAGTTGCTTTCAGTTAAAACAGCTCAAACATGCATTTTAGTCTGCATTAAGCTAGTCCTTAAGCCTTGTCTGTGAAACCGGGGGACTAACTCACAATTGCGAGAAATATAGTCAGAATTCCGAGTTATAAACTCAATTACGAGAAAAGTCACAATTGCAAGATATAATGTCAGAATTGTGAGATAAAAAGTCACAATTACCTTTTTTATTTTTTATGGCGGAAACAAGCTTCCATACAGACATGCACTAGTTTTCTTTAGCAAATGTAAAAATGTATTACAAAAACGGACCGTCTGCAAACAACATGATGCAACATGACAGGATACAAAATCCATATTTCTACGAGACACTTCTCTTACAATTTTCACTTTAACTGCCTTTCATAAACATATTTTTATTATGTAACACTGTGAAATAAGTTTTCAGCAACAAGCAATTAGTCTGTCCACAATGGCCAAAAAACTTCTAAACAACATGACACAGCCAATCAGAAGATAATTGGGTAACACTTTTGTTAACATTTGTTAAGGAGGACCTATGATGCTTTTTTCCATCTTCATCGTTCTTTAGTGTTTAATGTTGCTGTTTGAGCATGAAAAAGTTCTGCAAAGTCACACAGTCCCTCCAGTGGAAGTTATTCTCTACATCACTGTTTCTGAACACCCTGAAATGCCTCCATTATAGTCTTGAGTTTTCTTCACAATTTTCCTCATTTAAATAATTCATACGCAGAATAAAGGGGCGGGGCCTGGTTGAGTTAGTTAGTAGTGTTTTGAAACTGCCGGTTATGGTAAGAGGCGGGACATTTCCCAAACACGCTCGAAGTGCTCGACCAATCACAACACACTGCTCCAGCCGACCAATCAGAGCACATTGTGCTTTTCAGAAGGAGGGGCTTCACAGAGACAGGAACCAAACAGAGCGTTACTGACAGACTGAGAAGAGAGGAGCTGCAATATGAGGAAAATAATCAACATTCAAGCATGAAAACCTGTTCTAGTAGACTTAAACAAAATCAAAACCTTGAAAAAAAATAGAGCTGTATTTTTACAGCATTTATTGTTTCTTAATGTTAATTAATAAAATACAATTGTTCATAGTTTGTTCATTTGAGTTCATAGTGGAATAAAATGTATTATTATTGATGAATTATTCTTAACATTAAGATTATTAAATGCTGTAGAAGTATTGTTCATTGTTAAGTTTATGTTAATGAACGTAGTTAATGAAACCTTACTGTATACCAGTATTGTGTGTATAATGTAGATGTGTGGAGTTATTTTGGACCTGTTTTGAAGTCAATGCATCTCTTAACAACTTAAAAGGGTTGAAGAGACTGTTCATTATGGGCTTATTTCATGGCTGCCAACCGAATAAATGAATGCGAGGACATGCACATCTTCAAGCTCTGCAACAAGTGTTCACAGGCGGGATTCATCACAGCATGGGCTTTTCAATCACTCAATGCATGCAGAAGACAAAGTCTGGGTGAAATCTCTAGCCTTGTCTCATGATTCTGCCAGATCCTCTAGTTCGGTTCGTCCCAGATCTCGGTGCTTTTGCTTGTGCAGAACGGACCCTTCGGTCTAAATGTGTCCGCACTCCCACGCTCTCTTACCCTGACTCATCATCACAGACTCTGGAAATGGGTCGCTCTCTCCATGTCTCTGAAACTCACTCAGCCTCATTTGCATTTAAAAAGCGTAACAGTGCTATTTAGCAAAGCCTTGTACTATATCAGTGCACATATTTATTCCCCCCGGGTCTGAAACAAGCGAAAGAGAGACGTTTGATCCCTCTACTATGTTTGTTTCATGTTCTGCTTCCAGGCTTTATTAAAGTACAATCAACATCGGTCCACAGATGCGCTTGATTTTCTTCCATATAGGCCAAAAATATATTAATTAATGCAGGAAGGCTGTCTTGAATGTTTGATTTGTGTTATTCTGTCTATAAGGGACACGACACATTTCAAGAGCCTTCTGGCCAATGGTAGCTGAATGTCATATCACACAAACTTTACAGGGTCTGTTCGGTCTTAATAGTTAAAACATTATTTTTATGTTTTTACATACAACATAGTTAAAAAATGTTTTGATTACATGATTATGCACTTTGAATGCAATATAAGTCTCTTTGGATAAAAGTGTCAACAAATACATAAATGTATTTTTTTTAATTTTGTGGTTTGTGGCTTTAATAATGTTCTCAGAATGTAGACATTATCTATACATCATTCATGGAACACTTTTTTCTGCAACACAGACCTTCGTCTAACATTTGTAAATGTTACTACTTGTTTCAGAATGTTCAGAGAACATTCAAAAGTAACAATCCAATAATGTTTGCAAAATGGAATGTTTCTTTAATGTTTGGAATGTTTCCGTAATGTTTTCTAACATTTTCATAACTTAACAGGAATGTTAGCAAAACATTCTTAGAACATATTTTAGTTAACTGGGTAATTGATTATTGGCCAATATTAGTTTTCAGCCCAAGGGCTGGGTAAATATAGGACAGAACACATGTTGGGTTCATTTTACCCAGCAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230758 lncRNA downstream 26029 4935506 ~ 4948267 (-) True G203323
TU230732 lncRNA downstream 91393 4882653 ~ 4882903 (-) True G203298
TU230686 lncRNA downstream 172070 4801897 ~ 4802226 (-) True G203258
TU230644 lncRNA downstream 424039 4550020 ~ 4550257 (-) True G203221
TU230640 lncRNA downstream 428080 4545933 ~ 4546216 (-) True G203219
TU230792 lncRNA upstream 10422 4989157 ~ 4989456 (-) True G203355
TU230793 lncRNA upstream 12025 4990760 ~ 4990990 (-) True G203356
TU230796 lncRNA upstream 25737 5004472 ~ 5004977 (-) True G203359
TU230884 lncRNA upstream 117351 5096086 ~ 5096681 (-) True G203437
TU230889 lncRNA upstream 120763 5099498 ~ 5099712 (-) True G203442
CI01000047_04840115_04844233.mRNA mRNA downstream 130063 4839563 ~ 4844233 (-) True CI01000047_04840115_04844233
CI01000047_04790377_04795864.mRNA mRNA downstream 177980 4790224 ~ 4796316 (-) True CI01000047_04790377_04795864
CI01000047_04703391_04706693.mRNA mRNA downstream 267603 4703038 ~ 4706693 (-) True CI01000047_04703391_04706693
CI01000047_04613815_04652751.mRNA mRNA downstream 321545 4613815 ~ 4652751 (-) True CI01000047_04613815_04652751
CI01000047_04596548_04605172.mRNA mRNA downstream 369124 4595980 ~ 4605172 (-) True CI01000047_04596548_04605172
CI01000047_05108733_05109209.mRNA mRNA upstream 129269 5108004 ~ 5109256 (-) True CI01000047_05108733_05109209
CI01000047_05151314_05157285.mRNA mRNA upstream 170984 5149719 ~ 5158394 (-) True CI01000047_05151314_05157285
CI01000047_05219313_05222967.mRNA mRNA upstream 240455 5219190 ~ 5222990 (-) True CI01000047_05219313_05222967
CI01000047_05235089_05236228.mRNA mRNA upstream 255409 5234144 ~ 5236273 (-) True CI01000047_05235089_05236228
CI01000047_05247473_05248489.mRNA mRNA upstream 268228 5246963 ~ 5248681 (-) True CI01000047_05247473_05248489
TU230719 other downstream 97562 4874379 ~ 4876734 (-) True G203286
TU230543 other downstream 397331 4576786 ~ 4576965 (-) True G203130
TU230539 other downstream 687615 4278908 ~ 4278976 (-) True G203126
TU230541 other downstream 759866 4214294 ~ 4214430 (-) True G203128
TU230337 other downstream 987894 3985342 ~ 3986402 (-) True G202944
TU231342 other upstream 939773 5918508 ~ 5927344 (-) True G203840
TU231390 other upstream 1064518 6043253 ~ 6043789 (-) True G203881

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00008904 False 687 mRNA 0.50 8 NC_007123.7 1139690 ~ 1241565 (+)