RNA id: TU229064


Basic Information

Item Value
RNA id TU229064
length 451
lncRNA type intronic
GC content 0.31
exon number 2
gene id G201856
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 5072687 ~ 5073157 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAGCAATGTGTGCAATTGGAAAACGACTTAAAATGATGCAAGAATCAGATTTATTTATACCAAACTTACGCATTTAGATGTTCGTCATGCTAGCACTATGTCAGCTTTTACTGGACATTTTACAAAGGAGAAAGCAATTGGTGGACTGAAACATTTATTGTGCCTTTGCCATTATAAAAGCTGTGTATGTCGTGCCAAAATCACAAAATTACAGGTGCTTTTTTTTTTTTTTTTTTTTTTTCGTATTGTTTGTGTTTTAGTATAGTGTTGCGTCAGGGTTGTTTAGAATGCTGTTTAAATTCAGTAAAGAAGTGGAACTAAAAATAATTGAAATTCAATTAAATCCATAACTGTAATTTTTAGATTAAAATATTTTGAAATTTAGATAGATAGACAGATAGATAGACAGACAGACAGACAGAGATAGATAGACAGAAGGATAGATGGATGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228930 lncRNA upstream 106837 4961445 ~ 4965850 (+) True G201728
TU228924 lncRNA upstream 111396 4947630 ~ 4961291 (+) True G201722
TU229003 lncRNA upstream 159942 4911286 ~ 4912745 (+) True G201799
TU228977 lncRNA upstream 284124 4787934 ~ 4788563 (+) True G201773
TU228897 lncRNA upstream 339098 4732326 ~ 4733589 (+) True G201698
TU229052 lncRNA downstream 24428 5097585 ~ 5097981 (+) True G201847
TU229053 lncRNA downstream 35367 5108524 ~ 5109175 (+) False G201848
TU229054 lncRNA downstream 35367 5108524 ~ 5109175 (+) True G201848
TU229072 lncRNA downstream 36831 5109988 ~ 5110202 (+) True G201863
TU229078 lncRNA downstream 46193 5119350 ~ 5119644 (+) True G201869
CI01000047_04890965_04891981.mRNA mRNA upstream 180556 4890965 ~ 4892131 (+) True CI01000047_04890965_04891981
CI01000047_04845691_04876128.mRNA mRNA upstream 196559 4845691 ~ 4876128 (+) True CI01000047_04845691_04876128
CI01000047_04826817_04834995.mRNA mRNA upstream 237471 4826817 ~ 4835216 (+) True CI01000047_04826817_04834995
CI01000047_04678392_04690824.mRNA mRNA upstream 381590 4677992 ~ 4691097 (+) True CI01000047_04678392_04690824
CI01000047_04663268_04663847.mRNA mRNA upstream 408691 4662315 ~ 4663996 (+) True CI01000047_04663268_04663847
CI01000047_05080583_05091592.mRNA mRNA downstream 6177 5079334 ~ 5091965 (+) True CI01000047_05080583_05091592
CI01000047_05104311_05105437.mRNA mRNA downstream 31044 5104201 ~ 5105897 (+) True CI01000047_05104311_05105437
CI01000047_05159134_05162486.mRNA mRNA downstream 84048 5157205 ~ 5162595 (+) True CI01000047_05159134_05162486
CI01000047_05185698_05212150.mRNA mRNA downstream 112541 5185698 ~ 5212224 (+) True CI01000047_05185698_05212150
CI01000047_05267807_05269108.mRNA mRNA downstream 194650 5267807 ~ 5269150 (+) True CI01000047_05267807_05269108
TU228781 other upstream 590230 4415813 ~ 4482457 (+) False G201599
TU228535 other upstream 1370827 3696516 ~ 3701860 (+) True G201387
TU228278 other upstream 1984500 3018705 ~ 3088187 (+) True G201186
TU227053 other upstream 2494690 2520596 ~ 2577997 (+) True G200076
TU226970 other upstream 2753725 2316863 ~ 2318962 (+) True G200003
TU229634 other downstream 1742560 6815717 ~ 6816118 (+) True G202382

Expression Profile