RNA id: TU230884


Basic Information

Item Value
RNA id TU230884
length 596
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G203437
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 5096086 ~ 5096681 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCAACTTCATGTTATTTCTCTTATAGGAGAATGAAAATAATCTGTTATTTAAACGGTGATTAAATTATATATAGAAAGCGATCAAAGAACGCACCCTTTACAATCGCTGGAGCTGTCAATCAAACAGCATGAGTTTATCAGTGACTGAGTTCTGGACATGCGGCAAAACTCCCGTTTTATTCAATGGATCTCTTAGTTACAATGTGTGTGCACTGTTAGTTATGATGAAAGCATTCGTTAGTGTGCAGAAATTGAGTTTCAATGACGAGATCACTGCTTTCATGCGCTCAACAACATGTCTGTGATCGACTACAATCTTCATCACTGCAACCTTTCATGCCACGATCTAAATATAATGCCATAGATCTAAATGTAATGCAACACTTTTCATGATTAGTTAACCTTGAGAGCTGTAATAGTAAAAACGTGCTAAAAGTTTTCGAGAGAGTAATACTTAACTATTTCAAATGGAAAGATGTCAGCCAATCACAGCAGTGGGCGTTTACACTGAAGTCTCACAGCAGACACGCCCCTTAAAACAGAGCGTTCACATCAGAGTGCTAAATCAGGGTAGGAAAAATGCCTTTTATTTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230796 lncRNA downstream 91109 5004472 ~ 5004977 (-) True G203359
TU230793 lncRNA downstream 105096 4990760 ~ 4990990 (-) True G203356
TU230792 lncRNA downstream 106630 4989157 ~ 4989456 (-) True G203355
TU230737 lncRNA downstream 117351 4974296 ~ 4978735 (-) True G203303
TU230758 lncRNA downstream 147819 4935506 ~ 4948267 (-) True G203323
TU230889 lncRNA upstream 2817 5099498 ~ 5099712 (-) True G203442
TU230894 lncRNA upstream 15685 5112366 ~ 5113194 (-) False G203446
TU230893 lncRNA upstream 15941 5112622 ~ 5113194 (-) True G203446
TU230876 lncRNA upstream 25245 5121926 ~ 5164869 (-) True G203429
TU230992 lncRNA upstream 198789 5295470 ~ 5317664 (-) False G203516
CI01000047_04840115_04844233.mRNA mRNA downstream 251853 4839563 ~ 4844233 (-) True CI01000047_04840115_04844233
CI01000047_04790377_04795864.mRNA mRNA downstream 299770 4790224 ~ 4796316 (-) True CI01000047_04790377_04795864
CI01000047_04703391_04706693.mRNA mRNA downstream 389393 4703038 ~ 4706693 (-) True CI01000047_04703391_04706693
CI01000047_04613815_04652751.mRNA mRNA downstream 443335 4613815 ~ 4652751 (-) True CI01000047_04613815_04652751
CI01000047_04596548_04605172.mRNA mRNA downstream 490914 4595980 ~ 4605172 (-) True CI01000047_04596548_04605172
CI01000047_05108733_05109209.mRNA mRNA upstream 11323 5108004 ~ 5109256 (-) True CI01000047_05108733_05109209
CI01000047_05151314_05157285.mRNA mRNA upstream 53038 5149719 ~ 5158394 (-) True CI01000047_05151314_05157285
CI01000047_05219313_05222967.mRNA mRNA upstream 122509 5219190 ~ 5222990 (-) True CI01000047_05219313_05222967
CI01000047_05235089_05236228.mRNA mRNA upstream 137463 5234144 ~ 5236273 (-) True CI01000047_05235089_05236228
CI01000047_05247473_05248489.mRNA mRNA upstream 150282 5246963 ~ 5248681 (-) True CI01000047_05247473_05248489
TU230719 other downstream 219352 4874379 ~ 4876734 (-) True G203286
TU230543 other downstream 519121 4576786 ~ 4576965 (-) True G203130
TU230539 other downstream 809405 4278908 ~ 4278976 (-) True G203126
TU230541 other downstream 881656 4214294 ~ 4214430 (-) True G203128
TU230337 other downstream 1109684 3985342 ~ 3986402 (-) True G202944
TU231342 other upstream 821827 5918508 ~ 5927344 (-) True G203840
TU231390 other upstream 946572 6043253 ~ 6043789 (-) True G203881

Expression Profile