Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU230876 |
| length | 821 |
| lncRNA type | read_through |
| GC content | 0.44 |
| exon number | 2 |
| gene id | G203429 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000047 |
| NCBI id | null |
| chromosome length | 7523058 |
| location | 5121926 ~ 5164869 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU230894 | lncRNA | downstream | 8732 | 5112366 ~ 5113194 (-) | False | G203446 |
| TU230893 | lncRNA | downstream | 8732 | 5112622 ~ 5113194 (-) | True | G203446 |
| TU230889 | lncRNA | downstream | 22214 | 5099498 ~ 5099712 (-) | True | G203442 |
| TU230884 | lncRNA | downstream | 25245 | 5096086 ~ 5096681 (-) | True | G203437 |
| TU230796 | lncRNA | downstream | 116949 | 5004472 ~ 5004977 (-) | True | G203359 |
| TU230992 | lncRNA | upstream | 130601 | 5295470 ~ 5317664 (-) | False | G203516 |
| TU230993 | lncRNA | upstream | 130601 | 5295470 ~ 5314304 (-) | True | G203516 |
| TU230862 | lncRNA | upstream | 222223 | 5387092 ~ 5388043 (-) | True | G203417 |
| TU231051 | lncRNA | upstream | 225853 | 5390722 ~ 5391012 (-) | True | G203574 |
| TU231053 | lncRNA | upstream | 228229 | 5393098 ~ 5393337 (-) | True | G203576 |
| CI01000047_05108733_05109209.mRNA | mRNA | downstream | 12670 | 5108004 ~ 5109256 (-) | True | CI01000047_05108733_05109209 |
| CI01000047_04840115_04844233.mRNA | mRNA | downstream | 277693 | 4839563 ~ 4844233 (-) | True | CI01000047_04840115_04844233 |
| CI01000047_04790377_04795864.mRNA | mRNA | downstream | 325610 | 4790224 ~ 4796316 (-) | True | CI01000047_04790377_04795864 |
| CI01000047_04703391_04706693.mRNA | mRNA | downstream | 415233 | 4703038 ~ 4706693 (-) | True | CI01000047_04703391_04706693 |
| CI01000047_04613815_04652751.mRNA | mRNA | downstream | 469175 | 4613815 ~ 4652751 (-) | True | CI01000047_04613815_04652751 |
| CI01000047_05219313_05222967.mRNA | mRNA | upstream | 54321 | 5219190 ~ 5222990 (-) | True | CI01000047_05219313_05222967 |
| CI01000047_05235089_05236228.mRNA | mRNA | upstream | 69275 | 5234144 ~ 5236273 (-) | True | CI01000047_05235089_05236228 |
| CI01000047_05247473_05248489.mRNA | mRNA | upstream | 82094 | 5246963 ~ 5248681 (-) | True | CI01000047_05247473_05248489 |
| CI01000047_05546059_05547988.mRNA | mRNA | upstream | 379912 | 5544781 ~ 5548356 (-) | True | CI01000047_05546059_05547988 |
| CI01000047_05805272_05807974.mRNA | mRNA | upstream | 640403 | 5805272 ~ 5807974 (-) | True | CI01000047_05805272_05807974 |
| TU230719 | other | downstream | 245192 | 4874379 ~ 4876734 (-) | True | G203286 |
| TU230543 | other | downstream | 544961 | 4576786 ~ 4576965 (-) | True | G203130 |
| TU230539 | other | downstream | 835245 | 4278908 ~ 4278976 (-) | True | G203126 |
| TU230541 | other | downstream | 907496 | 4214294 ~ 4214430 (-) | True | G203128 |
| TU230337 | other | downstream | 1135524 | 3985342 ~ 3986402 (-) | True | G202944 |
| TU231342 | other | upstream | 753639 | 5918508 ~ 5927344 (-) | True | G203840 |
| TU231390 | other | upstream | 878384 | 6043253 ~ 6043789 (-) | True | G203881 |
