RNA id: TU230992


Basic Information

Item Value
RNA id TU230992
length 529
lncRNA type antisense_over
GC content 0.44
exon number 3
gene id G203516
representative False

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 5295470 ~ 5317664 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTAACATGACGGCACATGCTAGTGGATGAGTTGAATCAACTCCACAGCAACTACATAAATTTATCCACTAACCATTCAGAAACGTCCAGTTTCCTGAGTCTCTCCATCAGTGTCGACTCCGGTTTGAACAATGTAAGGCTGAACTCCGTTACTGACAATCCTCATTTTGGCTGCGTGAGATTCTCCAGCTTTGTTGTTGTTGAGCAACCGAAGCGCGAGCTGTTAAAGCTCCGCCCTCTTCTGGAAAGGGGGCCGGGAGCAGCAGCTCATTTGCATTTAAAGGGACACACACAAAAACGGCGTGTTTTTGCTCACACCCAAATAGGGGCAAAATTGACAAGCTATAATAAATGATCTGTGGGGTATTTTGAGCTGAAACTTTACAGACACATTCTGGGGACACCAGAGACTTATATTACATCTTGTAAAAGGGGCATAATAGGTCCATTTTAAAGTTCTCTAATATCACGTACAGACAGTGTGACAGATCACATGACTTCAGCTGCACTCTGCTGGTCATAAACTTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230876 lncRNA downstream 130601 5121926 ~ 5164869 (-) True G203429
TU230894 lncRNA downstream 182276 5112366 ~ 5113194 (-) False G203446
TU230893 lncRNA downstream 182276 5112622 ~ 5113194 (-) True G203446
TU230889 lncRNA downstream 195758 5099498 ~ 5099712 (-) True G203442
TU230884 lncRNA downstream 198789 5096086 ~ 5096681 (-) True G203437
TU230862 lncRNA upstream 69428 5387092 ~ 5388043 (-) True G203417
TU231051 lncRNA upstream 73058 5390722 ~ 5391012 (-) True G203574
TU231053 lncRNA upstream 75434 5393098 ~ 5393337 (-) True G203576
TU231188 lncRNA upstream 320779 5638443 ~ 5638653 (-) True G203709
TU231191 lncRNA upstream 325081 5642745 ~ 5642967 (-) True G203712
CI01000047_05247473_05248489.mRNA mRNA downstream 46789 5246963 ~ 5248681 (-) True CI01000047_05247473_05248489
CI01000047_05235089_05236228.mRNA mRNA downstream 59197 5234144 ~ 5236273 (-) True CI01000047_05235089_05236228
CI01000047_05219313_05222967.mRNA mRNA downstream 72480 5219190 ~ 5222990 (-) True CI01000047_05219313_05222967
CI01000047_05151314_05157285.mRNA mRNA downstream 137076 5149719 ~ 5158394 (-) True CI01000047_05151314_05157285
CI01000047_05108733_05109209.mRNA mRNA downstream 186214 5108004 ~ 5109256 (-) True CI01000047_05108733_05109209
CI01000047_05546059_05547988.mRNA mRNA upstream 227117 5544781 ~ 5548356 (-) True CI01000047_05546059_05547988
CI01000047_05805272_05807974.mRNA mRNA upstream 487608 5805272 ~ 5807974 (-) True CI01000047_05805272_05807974
CI01000047_05862382_05868129.mRNA mRNA upstream 544161 5861825 ~ 5868679 (-) True CI01000047_05862382_05868129
CI01000047_05869347_05869519.mRNA mRNA upstream 551620 5869284 ~ 5869519 (-) True CI01000047_05869347_05869519
CI01000047_05958264_05971163.mRNA mRNA upstream 640227 5957891 ~ 5971163 (-) True CI01000047_05958264_05971163
TU230719 other downstream 418736 4874379 ~ 4876734 (-) True G203286
TU230543 other downstream 718505 4576786 ~ 4576965 (-) True G203130
TU230539 other downstream 1008789 4278908 ~ 4278976 (-) True G203126
TU230541 other downstream 1081040 4214294 ~ 4214430 (-) True G203128
TU230337 other downstream 1309068 3985342 ~ 3986402 (-) True G202944
TU231342 other upstream 600844 5918508 ~ 5927344 (-) True G203840
TU231390 other upstream 725589 6043253 ~ 6043789 (-) True G203881

Expression Profile