RNA id: TU230862



Basic Information


Item Value
RNA id TU230862
length 923
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G203417
representative True

Chromosome Information


Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 5387092 ~ 5388043 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GAAAACTTTGAATTAAACATTTAGTTTGAAAGTGACTGGCTGACTGGAAAGACTAGCTTAAAACATTGGATTACTCAAGACGGTAATGAACAGAGTCATCATCGCTTTTCATTCAAATGAGACACGACTATACTGAGAGCTTTCATGTGCACAGAAATACACACACACCTAAACAACCCCTTATGTAAATCATTCAAGTTTTAATAATTATTCAAGTATTTTGCAATCAATCCTTTTTTGCCGTCTAAACGAATGTGGTCCGCGAGTCATTCATAAAACAAATAAAAATTACATAAAATACGTAGAAAAATATTCCATCGGATAATAAACCTACAGTATACACCAAAAAAAGGCTGCTTTGGTCGCTTCTTTCAGTGCAGTCAGGTGACATTCAAAGATTCGACCAATGAAAAGCCTCAGCCAAGACCCACATCCAATGACATCATCACGACGAAGCCAAGAATGGATGTCCACGAGGCCAGCTTACCATTCCCACTGTAAGAGAAACACACACACATTCAGTGGCATACGAACATCTGCAAACTTTTCCTTTCAGTAATGACTTTTACTGTGTTCTCACCTGACTTGAGCTTCAGGAATGATGTCATCGACCACCACATACACCATGGCTCCTGCGGCGAAGGCGAGAGCGTACGGTAGCAACGGCTCCGCCAGCACCACGGCAACGGCCCCTAACAACCCAGCCAGAGGCTCGACCATCCCGCTCAGCTGTCCGTACCTGTGAGACAGAGGCCGCACCGTCACACAGCTCGTGTAGTGCTCCGAATCGCTCAATTAACAGCTTTTAGAATGTCTCAGAAATCAATAAGAGCGCTGAGGACATATTAGGAGTAAATTAAGACAAATAGACGTTAATAAATGTTTGTGACTCTGGCATTGTCCCAAAACCAAGAGAGCTGCAG

Function


GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU230992 lncRNA downstream 69428 5295470 ~ 5317664 (-) False G203516
TU230993 lncRNA downstream 72788 5295470 ~ 5314304 (-) True G203516
TU230876 lncRNA downstream 222223 5121926 ~ 5164869 (-) True G203429
TU230894 lncRNA downstream 273898 5112366 ~ 5113194 (-) False G203446
TU230893 lncRNA downstream 273898 5112622 ~ 5113194 (-) True G203446
TU231051 lncRNA upstream 2679 5390722 ~ 5391012 (-) True G203574
TU231053 lncRNA upstream 5055 5393098 ~ 5393337 (-) True G203576
TU231188 lncRNA upstream 250400 5638443 ~ 5638653 (-) True G203709
TU231191 lncRNA upstream 254702 5642745 ~ 5642967 (-) True G203712
TU231192 lncRNA upstream 256292 5644335 ~ 5644537 (-) True G203713
CI01000047_05247473_05248489.mRNA mRNA downstream 138411 5246963 ~ 5248681 (-) True CI01000047_05247473_05248489
CI01000047_05235089_05236228.mRNA mRNA downstream 150819 5234144 ~ 5236273 (-) True CI01000047_05235089_05236228
CI01000047_05219313_05222967.mRNA mRNA downstream 164102 5219190 ~ 5222990 (-) True CI01000047_05219313_05222967
CI01000047_05151314_05157285.mRNA mRNA downstream 228698 5149719 ~ 5158394 (-) True CI01000047_05151314_05157285
CI01000047_05108733_05109209.mRNA mRNA downstream 277836 5108004 ~ 5109256 (-) True CI01000047_05108733_05109209
CI01000047_05546059_05547988.mRNA mRNA upstream 156738 5544781 ~ 5548356 (-) True CI01000047_05546059_05547988
CI01000047_05805272_05807974.mRNA mRNA upstream 417229 5805272 ~ 5807974 (-) True CI01000047_05805272_05807974
CI01000047_05862382_05868129.mRNA mRNA upstream 473782 5861825 ~ 5868679 (-) True CI01000047_05862382_05868129
CI01000047_05869347_05869519.mRNA mRNA upstream 481241 5869284 ~ 5869519 (-) True CI01000047_05869347_05869519
CI01000047_05958264_05971163.mRNA mRNA upstream 569848 5957891 ~ 5971163 (-) True CI01000047_05958264_05971163
TU230719 other downstream 510358 4874379 ~ 4876734 (-) True G203286
TU230543 other downstream 810127 4576786 ~ 4576965 (-) True G203130
TU230539 other downstream 1100411 4278908 ~ 4278976 (-) True G203126
TU230541 other downstream 1172662 4214294 ~ 4214430 (-) True G203128
TU230337 other downstream 1400690 3985342 ~ 3986402 (-) True G202944
TU231342 other upstream 530465 5918508 ~ 5927344 (-) True G203840
TU231390 other upstream 655210 6043253 ~ 6043789 (-) True G203881

Expression Profile