RNA id: TU231051


Basic Information

Item Value
RNA id TU231051
length 291
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G203574
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 5390722 ~ 5391012 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGAGCTTCTTTGGGCTTACTGCAGTAAGTCGTATCATTGAAATGACAAACTCAGTCTCTGTCCATTAAACAGGATTATGCTTTTTTTACGTTTATGTTCAGCTTTCTTTAGTGTGTAATGTTGCTTTTTGAGCATGAAAAGTTCTAAAGTCCCTCCAGCGGGAGTTATTCTCTACATCACTGTTTCTAAACTCTCTGAAACGCCTCCATTGTAGTCTTGAGTTTTCTTCCAGGAACAAACACGTCACAATATTCCTCATTTAAATAATTCATATGCAGAATAAAGGGGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230862 lncRNA downstream 2679 5387092 ~ 5388043 (-) True G203417
TU230992 lncRNA downstream 73058 5295470 ~ 5317664 (-) False G203516
TU230993 lncRNA downstream 76418 5295470 ~ 5314304 (-) True G203516
TU230876 lncRNA downstream 225853 5121926 ~ 5164869 (-) True G203429
TU230894 lncRNA downstream 277528 5112366 ~ 5113194 (-) False G203446
TU231053 lncRNA upstream 2086 5393098 ~ 5393337 (-) True G203576
TU231188 lncRNA upstream 247431 5638443 ~ 5638653 (-) True G203709
TU231191 lncRNA upstream 251733 5642745 ~ 5642967 (-) True G203712
TU231192 lncRNA upstream 253323 5644335 ~ 5644537 (-) True G203713
TU231198 lncRNA upstream 261733 5652745 ~ 5652958 (-) True G203719
CI01000047_05247473_05248489.mRNA mRNA downstream 142041 5246963 ~ 5248681 (-) True CI01000047_05247473_05248489
CI01000047_05235089_05236228.mRNA mRNA downstream 154449 5234144 ~ 5236273 (-) True CI01000047_05235089_05236228
CI01000047_05219313_05222967.mRNA mRNA downstream 167732 5219190 ~ 5222990 (-) True CI01000047_05219313_05222967
CI01000047_05151314_05157285.mRNA mRNA downstream 232328 5149719 ~ 5158394 (-) True CI01000047_05151314_05157285
CI01000047_05108733_05109209.mRNA mRNA downstream 281466 5108004 ~ 5109256 (-) True CI01000047_05108733_05109209
CI01000047_05546059_05547988.mRNA mRNA upstream 153769 5544781 ~ 5548356 (-) True CI01000047_05546059_05547988
CI01000047_05805272_05807974.mRNA mRNA upstream 414260 5805272 ~ 5807974 (-) True CI01000047_05805272_05807974
CI01000047_05862382_05868129.mRNA mRNA upstream 470813 5861825 ~ 5868679 (-) True CI01000047_05862382_05868129
CI01000047_05869347_05869519.mRNA mRNA upstream 478272 5869284 ~ 5869519 (-) True CI01000047_05869347_05869519
CI01000047_05958264_05971163.mRNA mRNA upstream 566879 5957891 ~ 5971163 (-) True CI01000047_05958264_05971163
TU230719 other downstream 513988 4874379 ~ 4876734 (-) True G203286
TU230543 other downstream 813757 4576786 ~ 4576965 (-) True G203130
TU230539 other downstream 1104041 4278908 ~ 4278976 (-) True G203126
TU230541 other downstream 1176292 4214294 ~ 4214430 (-) True G203128
TU230337 other downstream 1404320 3985342 ~ 3986402 (-) True G202944
TU231342 other upstream 527496 5918508 ~ 5927344 (-) True G203840
TU231390 other upstream 652241 6043253 ~ 6043789 (-) True G203881

Expression Profile