RNA id: TU229174


Basic Information

Item Value
RNA id TU229174
length 261
lncRNA type antisense_over
GC content 0.48
exon number 2
gene id G201959
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 5525802 ~ 5625106 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGTGTGTCCCTTTAAATGCAAATGAGCTGCTGCTCCCGGCCCCCTTTCCAGAAGAGGGCGGGGCGGAGCTTTAACAGCTCACGCTTCGGTTGCTCAACAACAACAAAGCTGGAGAATCTCACGCAGCCAAAATGAGGATTGTCAGTAACGGTGTTCAGCCTTACATTGTTCAAACCAGAGTCGACACTGATGGAGAGACTCAGGAAGAAGTTACAACTTTTAGAATGAAACTGGACGTTTCTGAATGGTTAGTGGATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228919 lncRNA upstream 46296 5393431 ~ 5393859 (+) True G201717
TU229078 lncRNA upstream 406158 5119350 ~ 5119644 (+) True G201869
TU229072 lncRNA upstream 415600 5109988 ~ 5110202 (+) True G201863
TU229053 lncRNA upstream 416627 5108524 ~ 5109175 (+) False G201848
TU229054 lncRNA upstream 416627 5108524 ~ 5109175 (+) True G201848
TU229239 lncRNA downstream 7109 5632215 ~ 5632418 (+) True G202021
TU229248 lncRNA downstream 25260 5650366 ~ 5650573 (+) True G202030
TU229251 lncRNA downstream 29642 5654748 ~ 5655020 (+) True G202033
TU229336 lncRNA downstream 236781 5861887 ~ 5869731 (+) True G202111
TU229338 lncRNA downstream 254718 5879824 ~ 5882797 (+) True G202113
CI01000047_05468225_05478050.mRNA mRNA upstream 47182 5467089 ~ 5478620 (+) False CI01000047_05468225_05478050
CI01000047_05438344_05441756.mRNA mRNA upstream 83515 5435541 ~ 5442287 (+) True CI01000047_05438344_05441756
CI01000047_05380032_05387598.mRNA mRNA upstream 137550 5379365 ~ 5388252 (+) True CI01000047_05380032_05387598
CI01000047_05339574_05340802.mRNA mRNA upstream 184930 5337685 ~ 5340872 (+) True CI01000047_05339574_05340802
CI01000047_05315990_05318854.mRNA mRNA upstream 205391 5315584 ~ 5320411 (+) True CI01000047_05315990_05318854
CI01000047_05856549_05859800.mRNA mRNA downstream 231009 5856115 ~ 5859942 (+) True CI01000047_05856549_05859800
CI01000047_05887388_05899310.mRNA mRNA downstream 261116 5886222 ~ 5899612 (+) True CI01000047_05887388_05899310
CI01000047_05911739_05912506.mRNA mRNA downstream 286533 5911639 ~ 5914944 (+) True CI01000047_05911739_05912506
CI01000047_05927095_05951348.mRNA mRNA downstream 301989 5927095 ~ 5951356 (+) True CI01000047_05927095_05951348
CI01000047_05983785_06007139.mRNA mRNA downstream 358679 5983785 ~ 6007342 (+) True CI01000047_05983785_06007139
TU228781 other upstream 1043345 4415813 ~ 4482457 (+) False G201599
TU228535 other upstream 1823942 3696516 ~ 3701860 (+) True G201387
TU228278 other upstream 2437615 3018705 ~ 3088187 (+) True G201186
TU227053 other upstream 2947805 2520596 ~ 2577997 (+) True G200076
TU226970 other upstream 3206840 2316863 ~ 2318962 (+) True G200003
TU229634 other downstream 1190611 6815717 ~ 6816118 (+) True G202382

Expression Profile