RNA id: TU231188


Basic Information

Item Value
RNA id TU231188
length 211
lncRNA type inter_gene
GC content 0.27
exon number 1
gene id G203709
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 5638443 ~ 5638653 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTAGCACTACCGTTCAAAAGTTTGGGGTCAGTAAGAGGTTTTTTTTTTTTTTTTTGGAAAGAAAATAAAGAAATTAATACTTTTATTCAGCAAGGATGCATTAAATTGATCAAAAGTTACAGTAAAGACATTTATAATGATGCAAAAGCTTTATATTTCAGATAAATGCTGTTCTTTTGAACTTCTATTGATCAAATAATCCTGAAAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231053 lncRNA downstream 245106 5393098 ~ 5393337 (-) True G203576
TU231051 lncRNA downstream 247431 5390722 ~ 5391012 (-) True G203574
TU230862 lncRNA downstream 250400 5387092 ~ 5388043 (-) True G203417
TU230992 lncRNA downstream 320779 5295470 ~ 5317664 (-) False G203516
TU230993 lncRNA downstream 324139 5295470 ~ 5314304 (-) True G203516
TU231191 lncRNA upstream 4092 5642745 ~ 5642967 (-) True G203712
TU231192 lncRNA upstream 5682 5644335 ~ 5644537 (-) True G203713
TU231198 lncRNA upstream 14092 5652745 ~ 5652958 (-) True G203719
TU231199 lncRNA upstream 14364 5653017 ~ 5654088 (-) True G203720
TU231237 lncRNA upstream 112148 5750801 ~ 5953288 (-) True G203752
CI01000047_05546059_05547988.mRNA mRNA downstream 90087 5544781 ~ 5548356 (-) True CI01000047_05546059_05547988
CI01000047_05247473_05248489.mRNA mRNA downstream 389762 5246963 ~ 5248681 (-) True CI01000047_05247473_05248489
CI01000047_05235089_05236228.mRNA mRNA downstream 402170 5234144 ~ 5236273 (-) True CI01000047_05235089_05236228
CI01000047_05219313_05222967.mRNA mRNA downstream 415453 5219190 ~ 5222990 (-) True CI01000047_05219313_05222967
CI01000047_05151314_05157285.mRNA mRNA downstream 480049 5149719 ~ 5158394 (-) True CI01000047_05151314_05157285
CI01000047_05805272_05807974.mRNA mRNA upstream 166619 5805272 ~ 5807974 (-) True CI01000047_05805272_05807974
CI01000047_05862382_05868129.mRNA mRNA upstream 223172 5861825 ~ 5868679 (-) True CI01000047_05862382_05868129
CI01000047_05869347_05869519.mRNA mRNA upstream 230631 5869284 ~ 5869519 (-) True CI01000047_05869347_05869519
CI01000047_05958264_05971163.mRNA mRNA upstream 319238 5957891 ~ 5971163 (-) True CI01000047_05958264_05971163
CI01000047_06139714_06142702.mRNA mRNA upstream 500964 6139617 ~ 6142702 (-) True CI01000047_06139714_06142702
TU230719 other downstream 761709 4874379 ~ 4876734 (-) True G203286
TU230543 other downstream 1061478 4576786 ~ 4576965 (-) True G203130
TU230539 other downstream 1351762 4278908 ~ 4278976 (-) True G203126
TU230541 other downstream 1424013 4214294 ~ 4214430 (-) True G203128
TU230337 other downstream 1652041 3985342 ~ 3986402 (-) True G202944
TU231342 other upstream 279855 5918508 ~ 5927344 (-) True G203840
TU231390 other upstream 404600 6043253 ~ 6043789 (-) True G203881

Expression Profile