RNA id: TU231364



Basic Information


Item Value
RNA id TU231364
length 307
lncRNA type intronic
GC content 0.46
exon number 1
gene id G203859
representative True

Chromosome Information


Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 5984581 ~ 5984887 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CCTGTTCTTAATTGGCCAGCAAACTCGCCTGACCTTAACCCCATAGAAAATCTATGGGGTATTGTGAAGAGGAAGATGCGATATGCCAGACCCAACAATGCAGAAGAGCTGAAGGCCACTATCAGAGCAATCTGGGCTCTTATAACACCTGAGCAGTGCCACAGACTGATCGACTCCATGCCACGCCGCATTGCTGCAGTAATTCAGGCAAAAGGAGCCCCAACTAAGTATTGAGTGCTGCACATGCTCATACTTTTCATGTTCATACTTTTCAGTTGGCCAAGATTTCTAAAAATCCTTTCTTTGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU231363 lncRNA downstream 1517 5982744 ~ 5983064 (-) True G203858
TU231362 lncRNA downstream 3020 5980800 ~ 5981561 (-) True G203857
TU231358 lncRNA downstream 8325 5975910 ~ 5976256 (-) True G203853
TU231237 lncRNA downstream 31293 5750801 ~ 5953288 (-) True G203752
TU231249 lncRNA downstream 180423 5803136 ~ 5804158 (-) True G203764
TU231369 lncRNA upstream 6890 5991777 ~ 5992089 (-) True G203861
TU231385 lncRNA upstream 44702 6029589 ~ 6029905 (-) True G203876
TU231387 lncRNA upstream 50149 6035036 ~ 6035320 (-) True G203878
TU231394 lncRNA upstream 70582 6055469 ~ 6056471 (-) True G203884
TU231398 lncRNA upstream 76643 6061530 ~ 6061952 (-) True G203888
CI01000047_05958264_05971163.mRNA mRNA downstream 13418 5957891 ~ 5971163 (-) True CI01000047_05958264_05971163
CI01000047_05869347_05869519.mRNA mRNA downstream 115062 5869284 ~ 5869519 (-) True CI01000047_05869347_05869519
CI01000047_05862382_05868129.mRNA mRNA downstream 115902 5861825 ~ 5868679 (-) True CI01000047_05862382_05868129
CI01000047_05805272_05807974.mRNA mRNA downstream 176607 5805272 ~ 5807974 (-) True CI01000047_05805272_05807974
CI01000047_05546059_05547988.mRNA mRNA downstream 436225 5544781 ~ 5548356 (-) True CI01000047_05546059_05547988
CI01000047_06139714_06142702.mRNA mRNA upstream 154730 6139617 ~ 6142702 (-) True CI01000047_06139714_06142702
CI01000047_06184569_06194319.mRNA mRNA upstream 199185 6184072 ~ 6195664 (-) True CI01000047_06184569_06194319
CI01000047_06216778_06234561.mRNA mRNA upstream 230739 6215626 ~ 6235272 (-) True CI01000047_06216778_06234561
CI01000047_06242992_06270894.mRNA mRNA upstream 257840 6242727 ~ 6272791 (-) True CI01000047_06242992_06270894
CI01000047_06302441_06309359.mRNA mRNA upstream 317554 6302441 ~ 6309359 (-) True CI01000047_06302441_06309359
TU231342 other downstream 57237 5918508 ~ 5927344 (-) True G203840
TU230719 other downstream 1107847 4874379 ~ 4876734 (-) True G203286
TU230543 other downstream 1407616 4576786 ~ 4576965 (-) True G203130
TU230539 other downstream 1697900 4278908 ~ 4278976 (-) True G203126
TU230541 other downstream 1770151 4214294 ~ 4214430 (-) True G203128
TU231390 other upstream 58366 6043253 ~ 6043789 (-) True G203881

Expression Profile