RNA id: TU229405


Basic Information

Item Value
RNA id TU229405
length 353
lncRNA type intronic
GC content 0.39
exon number 1
gene id G202175
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 5989459 ~ 5989811 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGCAGGCTAATCAGGTAGATGTATGCTAAAAAACAGTAAGAACAAGAAATGCTTGATTTCACAACCTATAGCTTCAGTTATATACTAGTATATGAACCATGTAATTTAAAAGACATTAATGGACATTATAGCGCATTTTAAACGATATAAATCATAACGTGATTTTGCAGGAATTATAATCAGGCGCTAAAAATACTACCCATTAAAAGTCAGTTGAACCAATGGGATCACTCTGGGTCCTAAAGGAGACCCGATTCCTGGGGGGGACTCGATTTCTCACCACACCGTTTCCCGAACCGTATTGTCGCAAATTTGTCGTTCAACCACGTTGGTTGATGGTGTCATGAACTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229404 lncRNA upstream 2625 5986531 ~ 5986834 (+) True G202174
TU229351 lncRNA upstream 12414 5976654 ~ 5977045 (+) True G202126
TU229350 lncRNA upstream 13193 5975986 ~ 5976266 (+) True G202125
TU229282 lncRNA upstream 31055 5955239 ~ 5958404 (+) True G202063
TU229338 lncRNA upstream 106662 5879824 ~ 5882797 (+) True G202113
TU229416 lncRNA downstream 49144 6038955 ~ 6039154 (+) True G202186
TU229419 lncRNA downstream 52608 6042419 ~ 6042738 (+) True G202189
TU229421 lncRNA downstream 65178 6054989 ~ 6055250 (+) True G202191
TU229425 lncRNA downstream 71979 6061790 ~ 6062001 (+) False CI01000047_06062818_06067865
TU229426 lncRNA downstream 72206 6062017 ~ 6062236 (+) True CI01000047_06062818_06067865
CI01000047_05927095_05951348.mRNA mRNA upstream 38103 5927095 ~ 5951356 (+) True CI01000047_05927095_05951348
CI01000047_05911739_05912506.mRNA mRNA upstream 74515 5911639 ~ 5914944 (+) True CI01000047_05911739_05912506
CI01000047_05887388_05899310.mRNA mRNA upstream 89847 5886222 ~ 5899612 (+) True CI01000047_05887388_05899310
CI01000047_05856549_05859800.mRNA mRNA upstream 129517 5856115 ~ 5859942 (+) True CI01000047_05856549_05859800
CI01000047_05468225_05478050.mRNA mRNA upstream 510839 5467089 ~ 5478620 (+) False CI01000047_05468225_05478050
CI01000047_06045320_06049402.mRNA mRNA downstream 54891 6044702 ~ 6049687 (+) True CI01000047_06045320_06049402
CI01000047_06051877_06053164.mRNA mRNA downstream 61454 6051265 ~ 6053995 (+) True CI01000047_06051877_06053164
CI01000047_06058032_06060776.mRNA mRNA downstream 68221 6058032 ~ 6060994 (+) True CI01000047_06058032_06060776
CI01000047_06062818_06067865.mRNA mRNA downstream 71374 6061185 ~ 6068241 (+) False CI01000047_06062818_06067865
CI01000047_06086322_06106616.mRNA mRNA downstream 96511 6086322 ~ 6106722 (+) True CI01000047_06086322_06106616
TU228781 other upstream 1507002 4415813 ~ 4482457 (+) False G201599
TU228535 other upstream 2287599 3696516 ~ 3701860 (+) True G201387
TU228278 other upstream 2901272 3018705 ~ 3088187 (+) True G201186
TU227053 other upstream 3411462 2520596 ~ 2577997 (+) True G200076
TU226970 other upstream 3670497 2316863 ~ 2318962 (+) True G200003
TU229634 other downstream 825906 6815717 ~ 6816118 (+) True G202382

Expression Profile