RNA id: TU231602


Basic Information

Item Value
RNA id TU231602
length 584
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G204069
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 6708108 ~ 6708823 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGAGCATCGCAGAGCAGTGCAAGACGAGCATTTGTGGTTAAAAAGTATATAATGTTTATTTTTTTTAGAAAATGTCCGATGGTTTCTCTAGATAAGACTCTTATTCCTCGTCTGGGATCATGTAGAGCTCTTTGAAGCTGCACTGAAACTGACATTTGGACCTTCAACCCGTTGAACCCCAGTGAAGTCCACTATATGGAGAAAAATCCTGGAATGTTTTCCTCAAAAACCTTCATTTCTTTTCCACTGAAGAGAGGGAAAGTTATGTATATATTAGGTTATGTTTTAACCTTGATCCGTCCTGTGTGCTTGTACTGACCTCTGTACCTATAAAGCTCTACGGCACACTGGATTAAAGTGTATAAACTATATTAAGTGAGATGAAATGTTACAATTTACATTGTTGGTAAAAACTGAGTTGTTGCGTAGTTGAAATAATTTAAATATTTTAAATGTGAAATATTTTTAATTATATATAGTCAGTGAAACATTTTTCAATGTTTATTTAACCTTTGCTGCTTTTTTTAGTCTTAAATTTTACAATATTAAGCTTTAAAGCTCAAATAGATAATTTAATTGATGGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231472 lncRNA downstream 134527 6568997 ~ 6573581 (-) True G203946
TU231489 lncRNA downstream 155937 6550190 ~ 6552171 (-) True G203963
TU231468 lncRNA downstream 162044 6540025 ~ 6546064 (-) True G203942
TU231563 lncRNA downstream 241889 6464440 ~ 6466219 (-) True G204031
TU231543 lncRNA downstream 293866 6374619 ~ 6414242 (-) True G204012
TU231436 lncRNA upstream 39345 6748168 ~ 6773497 (-) True G203919
TU231456 lncRNA upstream 44966 6753789 ~ 6756733 (-) True G203930
TU231631 lncRNA upstream 140879 6849702 ~ 6850132 (-) True G204095
TU231633 lncRNA upstream 142816 6851639 ~ 6851838 (-) True G204097
TU231634 lncRNA upstream 143780 6852603 ~ 6852803 (-) True G204098
CI01000047_06667661_06692521.mRNA mRNA downstream 15587 6667220 ~ 6692521 (-) True CI01000047_06667661_06692521
CI01000047_06660338_06666635.mRNA mRNA downstream 41473 6660300 ~ 6666635 (-) True CI01000047_06660338_06666635
CI01000047_06644025_06659494.mRNA mRNA downstream 48414 6643750 ~ 6659694 (-) True CI01000047_06644025_06659494
CI01000047_06587350_06593162.mRNA mRNA downstream 114946 6587090 ~ 6593162 (-) True CI01000047_06587350_06593162
CI01000047_06574147_06577660.mRNA mRNA downstream 130129 6574048 ~ 6577979 (-) True CI01000047_06574147_06577660
CI01000047_06843638_06844618.mRNA mRNA upstream 134547 6843370 ~ 6844618 (-) True CI01000047_06843638_06844618
CI01000047_06900704_06954882.mRNA mRNA upstream 191881 6900704 ~ 6954882 (-) True CI01000047_06900704_06954882
CI01000047_06958499_06967108.mRNA mRNA upstream 249160 6957983 ~ 6967834 (-) True CI01000047_06958499_06967108
CI01000047_06968741_06972782.mRNA mRNA upstream 259501 6968324 ~ 6972850 (-) True CI01000047_06968741_06972782
CI01000047_06978552_06982232.mRNA mRNA upstream 269625 6978448 ~ 6982542 (-) True CI01000047_06978552_06982232
TU231390 other downstream 664319 6043253 ~ 6043789 (-) True G203881
TU231342 other downstream 780764 5918508 ~ 5927344 (-) True G203840
TU230719 other downstream 1831374 4874379 ~ 4876734 (-) True G203286
TU230543 other downstream 2131143 4576786 ~ 4576965 (-) True G203130
TU230539 other downstream 2421427 4278908 ~ 4278976 (-) True G203126

Expression Profile