RNA id: TU231473



Basic Information


Item Value
RNA id TU231473
length 2152
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G203947
representative True

Chromosome Information


Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 6896001 ~ 6898152 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTTGTGTTCTGAAGATGAATGAAGGTCTTACGGGTGTGGAACGACATGAGGGTGACAGAAATTTCATTTTTGGCTGAACTAACCCTTTAAATGTGTATTTTAGATGTTTTCTTTACACTAGTCTGAAAGAGGACATGTTATGCAAGCAAAGTAGACCTCAAAACTGAGTAGTGCATGAAAAAAAACAATGGTTTTGTCTGTAGTGTCCAATAAGTAAGTTGATAGACGTTCTCCATGCAGTGATTCTCGCCACAGGAGGGCAGCAGTGAGCCGCTGCTTTACTGCCTTTGAAATGACATTCAGTGAGGAAGGAGCTGCTCCTCCCCCTTCTGTGATTGGCTGCTGGATGAGTACAAACAGTACATGTTCTGACACACACACACTATTGAACGTCTGAATCAGCACTCAGGCATTCAGTAACAGCGAGGGAAGCTCTGAACTCTGAGTGAGGAAAACTCAGAATCAAATCAACACTGATCTAGTGTTATGAGGTGCCTAACTTACAACCATCATGTTAGTCATCTAATATTCTCTTCAAGACTCGTCTTTTTAAAGATAGATCAGTCTAATTTAAATCAAAAAGTAAGACTGATTAGCTCTTGTCTAACTGATAGTTGATCAAACTAAAGTCTTAATATAGTGGCTAAGTTTATTAATCTGGCCTCTGAATAAGATTTTCTTTCTGCTGAAAATGAGTTAATGTTATCGGATTGGACTAAAACCGACAGACTTTGCTCTCACAGGGTATAACTTTTGTACTTTTTGCATTTTTTCCCCACTTTGTTACACTCGTGTTGTTCCCGGCCAAAAATGACCAGTCTATAAAAATAAAATTGCTTCTAAATCTCTCATTATTTCACTGAGGAGCCTGAGCTCAGATCCATTCACAAAAACATACAAAACCTGTGCTAACTGAAAGAAAACAAGTCCACCAAAAGATTGAATCACAAATGTGCTGATAATGAGAGATTTACAAAACACCAAATTAGGTTTTTAGCACAACAAGGGTTAAATTTGGCATGAAATGGAAGTTGCACTCGTCTTTTCTTCACTATTGTGACGTATATCTGAGTGAAACGCTTCACAAACAAGAACAAATGTAGGGCGGGGCTTGATTTTGTCTGTGGGGAATTGATTGGATGGTTGTGGTTTGCTATTGGTGGATCTCATGTGAGTGACAGGTTGCCCCGCCCTCGTCATCAGAGAAGAGAACATTTCATGGTGACTTTAAGAGTTTCACCTCTTTTCACCTCTTTCCTCAGCTCACACAATGAGGAGACGCGTGGAGCTCATCAAACATTCATCCACCTAACGCTGCGTCCCCCTCCGTCTCTCCGTCCTCCAGCTCTGCTCTGCTGTGGCTCTTATGTAACTCGTCCAGCTGGTGTGTCCAGGGATGTTTCCCAGGGCTTCACGAGCGTAATTGCCCAGATGCAGTGAGGACGCCTGAGGCTGGACTCTGCGGGGCCTTCAAACCCTCCATGAGTTTAGAGATGGACTGACCCTGGCTGATTCTTCAGTCAGTCAGTTTATAAAGCTGTACATTGATTTAAATTGTAATTTAAAAGTCCATACATACACTACTAGTCAAACTTTTGGAATAATTACATTTTATTGTGTTTTTTGAAAGAAGTTTCTTCTGCTCACCAAGGCTGCATTTGGATCATTGATAAATAAGGGTTTTAAAAGTGTGAAAAAACATAATAGAGATATAATTAATTTTGAAGTTTTATTAAGTGTTAACAATGAGATTATGTGGTTTTTATAATCAATCAACACTGATTTTGTCGTTTTTTACAAGATGGACAAAATTTGTCACCAAAAAAGTCATTCGGTTTAACCAAAATTTCAGTTTTACCGAATGAGGATATTTTCACACAATGCTAACAGGCTGATATCTAGCTAGCTAGCAAAAGGACAATCAAACATTTTATATTTAGTACAAGTTTTTAAAATATTACAACATTTTCCATGTTTTATAGCGGTTGTACCGAATGACCTGATGTTTCATGCGTATGATCAAGTGAAAACATGAATTTTTCAAATAGTTAAAAGAGAGTTAGTTACTTTGCTTCACGATCATGTGGTCCTTTGCAGGTGTCTGAATGATGTCACATCCTGTCACATGATATTGACCGCATGACTTGATCCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU231665 lncRNA downstream 2821 6892834 ~ 6893180 (-) True G204129
TU231634 lncRNA downstream 43198 6852603 ~ 6852803 (-) True G204098
TU231633 lncRNA downstream 44163 6851639 ~ 6851838 (-) True G204097
TU231631 lncRNA downstream 45869 6849702 ~ 6850132 (-) True G204095
TU231436 lncRNA downstream 122504 6748168 ~ 6773497 (-) True G203919
TU231675 lncRNA upstream 119971 7018123 ~ 7018330 (-) True G204139
TU231685 lncRNA upstream 165054 7063206 ~ 7063431 (-) True G204149
TU231461 lncRNA upstream 222301 7120453 ~ 7128069 (-) True G203935
TU231706 lncRNA upstream 386387 7284539 ~ 7285427 (-) True G204167
TU231714 lncRNA upstream 398388 7296540 ~ 7296838 (-) True G204175
CI01000047_06843638_06844618.mRNA mRNA downstream 51383 6843370 ~ 6844618 (-) True CI01000047_06843638_06844618
CI01000047_06667661_06692521.mRNA mRNA downstream 203480 6667220 ~ 6692521 (-) True CI01000047_06667661_06692521
CI01000047_06660338_06666635.mRNA mRNA downstream 229366 6660300 ~ 6666635 (-) True CI01000047_06660338_06666635
CI01000047_06644025_06659494.mRNA mRNA downstream 236307 6643750 ~ 6659694 (-) True CI01000047_06644025_06659494
CI01000047_06587350_06593162.mRNA mRNA downstream 302839 6587090 ~ 6593162 (-) True CI01000047_06587350_06593162
CI01000047_06900704_06954882.mRNA mRNA upstream 2552 6900704 ~ 6954882 (-) True CI01000047_06900704_06954882
CI01000047_06958499_06967108.mRNA mRNA upstream 59831 6957983 ~ 6967834 (-) True CI01000047_06958499_06967108
CI01000047_06968741_06972782.mRNA mRNA upstream 70172 6968324 ~ 6972850 (-) True CI01000047_06968741_06972782
CI01000047_06978552_06982232.mRNA mRNA upstream 80296 6978448 ~ 6982542 (-) True CI01000047_06978552_06982232
CI01000047_06993737_07007548.mRNA mRNA upstream 95570 6993722 ~ 7007548 (-) True CI01000047_06993737_07007548
TU231390 other downstream 852212 6043253 ~ 6043789 (-) True G203881
TU231342 other downstream 968657 5918508 ~ 5927344 (-) True G203840
TU230719 other downstream 2019267 4874379 ~ 4876734 (-) True G203286
TU230543 other downstream 2319036 4576786 ~ 4576965 (-) True G203130
TU230539 other downstream 2609320 4278908 ~ 4278976 (-) True G203126

Expression Profile