RNA id: TU231706


Basic Information

Item Value
RNA id TU231706
length 289
lncRNA type intronic
GC content 0.56
exon number 2
gene id G204167
representative True

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 7284539 ~ 7285427 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCGGTTCATCAACACCAATTGAATCGATTGACTTCCCTTACCGAGGAGCTGGTGAAAACTCTGCAGGGCCTTCGATTCAACGCCACCGAGGTTGCCACGCCACCGCCTGCGGCCTCCGCTTCGCCCAGAGGAACGCGAGAGGAGACGACAACTTCATCTGTGCCTCTACTGCGGCCAAGCTGGTCACATCAAGATCAACTGCCCCATTCGACCCACTCCGTCTAACCCAAAAGCGGTGAGTTCTCCACCTCCCACCGCTTATTCCTCTAACTGCCTCAAAATTCCCATA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231461 lncRNA downstream 156470 7120453 ~ 7128069 (-) True G203935
TU231685 lncRNA downstream 221108 7063206 ~ 7063431 (-) True G204149
TU231675 lncRNA downstream 266209 7018123 ~ 7018330 (-) True G204139
TU231473 lncRNA downstream 386387 6896001 ~ 6898152 (-) True G203947
TU231665 lncRNA downstream 391359 6892834 ~ 6893180 (-) True G204129
TU231714 lncRNA upstream 11113 7296540 ~ 7296838 (-) True G204175
TU231716 lncRNA upstream 12899 7298326 ~ 7298553 (-) True G204177
TU231720 lncRNA upstream 17619 7303046 ~ 7303290 (-) True G204181
TU231721 lncRNA upstream 20552 7305979 ~ 7306594 (-) True G204182
TU231725 lncRNA upstream 26022 7311449 ~ 7311662 (-) True G204186
CI01000047_07137958_07149332.mRNA mRNA downstream 135207 7137384 ~ 7149332 (-) True CI01000047_07137958_07149332
CI01000047_07072890_07079236.mRNA mRNA downstream 205303 7072545 ~ 7079236 (-) True CI01000047_07072890_07079236
CI01000047_07010651_07017023.mRNA mRNA downstream 267516 7010529 ~ 7017023 (-) True CI01000047_07010651_07017023
CI01000047_06993737_07007548.mRNA mRNA downstream 276991 6993722 ~ 7007548 (-) True CI01000047_06993737_07007548
CI01000047_06978552_06982232.mRNA mRNA downstream 301997 6978448 ~ 6982542 (-) True CI01000047_06978552_06982232
CI01000047_07350018_07350608.mRNA mRNA upstream 63704 7349131 ~ 7350844 (-) True CI01000047_07350018_07350608
CI01000047_07351900_07353699.mRNA mRNA upstream 66440 7351867 ~ 7353753 (-) True CI01000047_07351900_07353699
CI01000047_07389650_07393323.mRNA mRNA upstream 103716 7389143 ~ 7393753 (-) True CI01000047_07389650_07393323
CI01000047_07436294_07437420.mRNA mRNA upstream 150305 7435732 ~ 7437719 (-) True CI01000047_07436294_07437420
CI01000047_07445474_07451503.mRNA mRNA upstream 159432 7444859 ~ 7451503 (-) True CI01000047_07445474_07451503
TU231390 other downstream 1240750 6043253 ~ 6043789 (-) True G203881
TU231342 other downstream 1357195 5918508 ~ 5927344 (-) True G203840
TU230719 other downstream 2407805 4874379 ~ 4876734 (-) True G203286
TU230543 other downstream 2707574 4576786 ~ 4576965 (-) True G203130
TU230539 other downstream 2997858 4278908 ~ 4278976 (-) True G203126

Expression Profile