Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU231469 |
| length | 13542 |
| lncRNA type | antisense_over |
| GC content | 0.40 |
| exon number | 2 |
| gene id | G203943 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000047 |
| NCBI id | null |
| chromosome length | 7523058 |
| location | 7355166 ~ 7368728 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU231731 | lncRNA | downstream | 27320 | 7327497 ~ 7327846 (-) | True | G204192 |
| TU231725 | lncRNA | downstream | 43504 | 7311449 ~ 7311662 (-) | True | G204186 |
| TU231721 | lncRNA | downstream | 48572 | 7305979 ~ 7306594 (-) | True | G204182 |
| TU231720 | lncRNA | downstream | 51876 | 7303046 ~ 7303290 (-) | True | G204181 |
| TU231716 | lncRNA | downstream | 56613 | 7298326 ~ 7298553 (-) | True | G204177 |
| CI01000047_07351900_07353699.mRNA | mRNA | downstream | 1413 | 7351867 ~ 7353753 (-) | True | CI01000047_07351900_07353699 |
| CI01000047_07350018_07350608.mRNA | mRNA | downstream | 4322 | 7349131 ~ 7350844 (-) | True | CI01000047_07350018_07350608 |
| CI01000047_07137958_07149332.mRNA | mRNA | downstream | 205834 | 7137384 ~ 7149332 (-) | True | CI01000047_07137958_07149332 |
| CI01000047_07072890_07079236.mRNA | mRNA | downstream | 275930 | 7072545 ~ 7079236 (-) | True | CI01000047_07072890_07079236 |
| CI01000047_07010651_07017023.mRNA | mRNA | downstream | 338143 | 7010529 ~ 7017023 (-) | True | CI01000047_07010651_07017023 |
| CI01000047_07389650_07393323.mRNA | mRNA | upstream | 20415 | 7389143 ~ 7393753 (-) | True | CI01000047_07389650_07393323 |
| CI01000047_07436294_07437420.mRNA | mRNA | upstream | 67004 | 7435732 ~ 7437719 (-) | True | CI01000047_07436294_07437420 |
| CI01000047_07445474_07451503.mRNA | mRNA | upstream | 76131 | 7444859 ~ 7451503 (-) | True | CI01000047_07445474_07451503 |
| CI01000047_07453486_07457736.mRNA | mRNA | upstream | 84060 | 7452788 ~ 7457949 (-) | True | CI01000047_07453486_07457736 |
| CI01000047_07462130_07463407.mRNA | mRNA | upstream | 93005 | 7461733 ~ 7463407 (-) | True | CI01000047_07462130_07463407 |
| TU231390 | other | downstream | 1311377 | 6043253 ~ 6043789 (-) | True | G203881 |
| TU231342 | other | downstream | 1427822 | 5918508 ~ 5927344 (-) | True | G203840 |
| TU230719 | other | downstream | 2478432 | 4874379 ~ 4876734 (-) | True | G203286 |
| TU230543 | other | downstream | 2778201 | 4576786 ~ 4576965 (-) | True | G203130 |
| TU230539 | other | downstream | 3068485 | 4278908 ~ 4278976 (-) | True | G203126 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| mexican tetra (Astyanax mexicanus) | TU45114 | True | 1372 | lncRNA | 0.45 | 3 | NC_035900.1 | 1343410 ~ 1344921 (+) |
