RNA id: TU232192


Basic Information

Item Value
RNA id TU232192
length 264
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G204569
representative True

Chromosome Information

Item Value
chromosome id CI01000048
NCBI id null
chromosome length 1528931
location 683694 ~ 683957 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTACAACCTCCAATACCCAGAAGTCTTGTGAACACATATTTAATATTTGTTTTTTGGCCTTATTTCGGTGACTTATGTTTTTTGTTTTTTCAATAACCACGCATAAACATTATTCCTTCAAAAATACAAACATGTACATACATGTTGCTCACCTATTATGGTAGCCTAGTTTGTGCTGAATACAGTGTAATGACACATTTTCCATTAATATGTTTATGAGCAACTGAAAAAAGCACAAATGTCAGGGCATGTCAAAACTCCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232191 lncRNA upstream 360 682359 ~ 683334 (+) True G204568
TU232190 lncRNA upstream 6242 670679 ~ 677452 (+) True G204567
TU232189 lncRNA upstream 13017 670458 ~ 670677 (+) True G204566
TU232188 lncRNA upstream 13271 670187 ~ 670423 (+) True G204565
TU232187 lncRNA upstream 13622 668760 ~ 670072 (+) True CI01000048_00659494_00667971
TU232193 lncRNA downstream 385 684342 ~ 687727 (+) True G204570
TU232194 lncRNA downstream 4061 688018 ~ 688220 (+) True G204571
TU232195 lncRNA downstream 5039 688996 ~ 689533 (+) True G204572
TU232196 lncRNA downstream 6010 689967 ~ 690439 (+) True G204573
TU232197 lncRNA downstream 9325 693282 ~ 693590 (+) False CI01000048_00693752_00694265
CI01000048_00659494_00667971.mRNA mRNA upstream 14215 659022 ~ 669479 (+) False CI01000048_00659494_00667971
CI01000048_00567988_00568484.mRNA mRNA upstream 114642 567988 ~ 569052 (+) True CI01000048_00567988_00568484
CI01000048_00425103_00519682.mRNA mRNA upstream 163804 425103 ~ 519890 (+) True CI01000048_00425103_00519682
CI01000048_00403297_00404487.mRNA mRNA upstream 279080 403232 ~ 404614 (+) False CI01000048_00403297_00404487
CI01000048_00261577_00264226.mRNA mRNA upstream 418152 261400 ~ 265542 (+) False CI01000048_00261577_00264226
CI01000048_00693752_00694265.mRNA mRNA downstream 9115 693072 ~ 694348 (+) False CI01000048_00693752_00694265
CI01000048_00705234_00707566.mRNA mRNA downstream 20904 704861 ~ 707608 (+) True CI01000048_00705234_00707566
CI01000048_00713811_00714700.mRNA mRNA downstream 29522 713479 ~ 714947 (+) True CI01000048_00713811_00714700
CI01000048_00809677_00812096.mRNA mRNA downstream 125720 809677 ~ 813160 (+) True CI01000048_00809677_00812096
CI01000048_01003499_01009234.mRNA mRNA downstream 318791 1002748 ~ 1010512 (+) True CI01000048_01003499_01009234
TU232180 other upstream 21838 660719 ~ 661856 (+) False CI01000048_00659494_00667971
TU232089 other upstream 322033 361025 ~ 361661 (+) True G204472
TU232014 other upstream 397947 285270 ~ 285747 (+) True G204409
TU231798 other upstream 620097 63188 ~ 63597 (+) True G204233
TU232496 other downstream 309498 993455 ~ 993969 (+) False G204824
TU232648 other downstream 530415 1214372 ~ 1215807 (+) True CI01000048_01214358_01215546
TU232734 other downstream 698998 1382955 ~ 1383698 (+) True G205026

Expression Profile