RNA id: CI01000049_00715243_00718107.mRNA


Basic Information

Item Value
RNA id CI01000049_00715243_00718107.mRNA
length 2767
RNA type mRNA
GC content 0.39
exon number 6
gene id CI01000049_00715243_00718107
representative True

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 714971 ~ 719363 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAATTGGGAAGTTTTTTATCAAGATGATAATATTGCGGAAGTGATTACAGAGTATATTCATTTTTGCTTTGATACTGTGGTCCCAAAAAAGACCATTAAGATTTATCCAAATAACAAGGAATATATAACTCCTGAGATTAAGCATTGTATTAGGAGGAGAAATCAAGCTTTTAAGAATAATAATACAATGGAATTTAAAGAAATTCAAAAAGAACTGAGGATAAAATTGAGGGAAGCGAGAGAGCAACATAACTGCGTGTTAGAGAAGTGGTTTCAACTAAGAATTCTAAAAAGTTGTGGGATGTTGTTAAAGGAATGATTCATTTAAATTCAAACAAGAAAGAAATGCAGGTTTTAAATGAATTTGATAAGGCAAATGAATTCAATATTTTTTATAAACGGTTTGATTTGGCTGTGAGTGGTAATATTGGTAAATGTAGAGGCCTGCTTAGTTCAGTAACATGTGATTCTACACAGGACAGAATTGAAGTGGACCCAAGTGTTATCACTAAAATTTTTAAAAGGCTGCATACCAAAAAGGCTAGTGGGCCAGATGGTATTACAGCTCTTTTACTTAAAACATTTGCTGATGAATTAACCCCAGCGTGGAGTCCCTTATTTCAATTATCGGTTGATACGGGCAATATTCCCACAATATGGAAAAAAGCTGTCATTATCCCTGTCCCAAAAAAAAAAAAAAAACAGGAAAATAATGACTTTAGACCAGTGGCATTAACGTCCATAGTGATGAAATCACTTGAACGTACTGTGATAGGGAAATTGAGATAGAATGTGTTGCATAAATTAAATCCTTACCAATTTGCTTACAAAGAAAATAGGAGTACAGAGGATGCTTTAAATATTATGATACATTTTATTTTAAAACACCTTAAACATCCGGTAGCTTATGTTAGATTGACGTTCATGGATTTGAGTTCGGCATTTAATACCATACTTCCAGATACTTGTTAAATAAGAAAACAGATGGAGGTGAATCCTTATATAATTAAATGGTATTATGCATTTCTAATCGGATGACAATAGCAGGTGAAAGTTAATTCAACTTTCCCTGACATAGAGGTCATAAATGTTGGAGCTCCTCAAGGCTGCGTAAGTTCCCCCCTTCTTTTTACATTGTATACAAATGTCTGTAGGAATCGGTACACAAATAACTACATTATTAAATTTTCAGACGATACAGCCATACTCAGTTTGTTGACAAAAAATTCAGACGTTGGCATGTATAAAAATCAGGGATGGAAGGGGTTGTGCAGTGGTGTAAGGAACACAACTTGATTTTAAATGTTAAAAAAACTAAAGAAATTATCTTTGACCCAAGGCTTGTGGATGATCATAGCACAATTTCAGTTTATGAGGAGGAAGTTGAACAGGAGATTTTTGAGAGGTCTGTAAAGAAGCAGAGCCTTAAAGTTATTGGTGACCTAAGCCATATTCTCCATAAGGAGTATGAGTTGATGCCCTCAGGCAGGAGATATAGGGAAGCTCAGAAGAAGGTCAGTTTTCCTCCATTCTCGTTCTTCACTCATTTCATTTGCAATGAAGCTAAAGCCAGAAATGATCCTAGTTTCAAGCTCTCAAGCAGTAGCCATATAGTCATCAGAAACGAAAGACCACTGCATAAACATGGTGCTAGCAGAGTTCCTGTGTCAGATTCAGCAAATAGCCTTCAGGAAAAAGTCATATATAGAATGCAAGAACCTCCTGAAAGAACATCAGAGATGTTTCAGGCGATGCTCTCTGAATCATGTAGCCAGAGAATGTCTCGCGATCCTCAATGTGCTGAGTGTGATTCTGATAGACATTGCACAGTCATGCATCCAGACATAGCTCCGCCTCTCTTCACACATCCCATGCAAAAATCAGACACAGAACAACAGGACAATGGTACCCCAGAGAAACAACAGGAACAAGCTATCAAGATGTATGCCATATTTTACAACCAAAGCAAACGCTCACTGGCCAAAGGAGAGTTCTTTCAGCTTTTTCAGAATCCAAAGTGTGCTGATATGGTTCAGGAAAGATCTTGTTGCAATTATAGCAGACATCCAACAGATGTTCTATGGTTTCCTGGTGAAAGAAGACCACAGAAACTATTTGAGATTCCTCTACAACAACAACGACTTGAGCAAGGAAGTAGTAGAATACCGTATGAGGGTACATGTATTCGGGAACATGTCTTCGGGAACAGCCCTTCATCGGCAGTAGCCATATACAGTCTACGGTTAGCTGCACAGCAAGTTGAGCAAGAGTACAGAACTGACACTTTGCACTTTGTCGATAGGAATTTCTACGTGGACATCAGGCTCATGTCCTTTCCCACAGAAGCCAAAGCAATCAACCTGCCCAAGCACACTCAAGAATCACTTTCCAAGTCGAAGCTCCACAAAAGAGCCTCAAACAGTGTTGAGGTGATGCAAGCTTTCCTACCAGAAGACCTCACTTCTGGCCTCCAATATCTGAATTTTGATATGTGAGTTGGCCCACACAAAGAAGCATGGGTTTATACTGGGAATAGCCTCTTTGACCCTCTGGGCTTTGAGGCGCCAGTAATGATCCAGGGCAGATCACTGGTACATGATCTGACCAAAGAGGTACATGACTGGGACAAGGTCCTTCTTAAAGAGAAGAGAAGCAAGTGGGAGGAATGGAAAACACTAACACTTCATACACTGTGTTGTGTGTCTTTTCAGATGCCTCAAACTGGGCCATAGGAGAAGTGGCTTACCTCTGAGCTCTGACTAATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234783 lncRNA downstream 12311 702447 ~ 702660 (-) True G206886
TU234749 lncRNA downstream 68149 646573 ~ 646822 (-) True G206857
TU234746 lncRNA downstream 72423 642349 ~ 642548 (-) True G206854
TU234745 lncRNA downstream 72809 641917 ~ 642162 (-) True G206853
TU234744 lncRNA downstream 73222 641483 ~ 641749 (-) True G206852
TU234845 lncRNA upstream 60649 780012 ~ 780570 (-) False G206948
TU234847 lncRNA upstream 60649 780012 ~ 780302 (-) True G206948
TU234849 lncRNA upstream 61411 780774 ~ 780980 (-) True G206949
TU234833 lncRNA upstream 62372 781735 ~ 796259 (-) True G206936
TU234859 lncRNA upstream 77392 796755 ~ 797602 (-) True G206959
CI01000049_00400682_00411259.mRNA mRNA downstream 303712 400667 ~ 411259 (-) True CI01000049_00400682_00411259
CI01000049_00375347_00377699.mRNA mRNA downstream 337140 375036 ~ 377831 (-) True CI01000049_00375347_00377699
CI01000049_00345414_00349493.mRNA mRNA downstream 365316 345409 ~ 349655 (-) True CI01000049_00345414_00349493
CI01000049_00330959_00338938.mRNA mRNA downstream 373741 330707 ~ 341230 (-) True CI01000049_00330959_00338938
CI01000049_00297474_00300898.mRNA mRNA downstream 413933 297264 ~ 301038 (-) True CI01000049_00297474_00300898
CI01000049_00720262_00721411.mRNA mRNA upstream 891 720254 ~ 721411 (-) True CI01000049_00720262_00721411
CI01000049_00732479_00766646.mRNA mRNA upstream 13116 732479 ~ 766646 (-) True CI01000049_00732479_00766646
CI01000049_00769434_00772846.mRNA mRNA upstream 49817 769180 ~ 772846 (-) True CI01000049_00769434_00772846
CI01000049_00841319_00845716.mRNA mRNA upstream 120360 839723 ~ 845716 (-) True CI01000049_00841319_00845716
CI01000049_00848509_00854128.mRNA mRNA upstream 128295 847658 ~ 854128 (-) True CI01000049_00848509_00854128
TU234741 other downstream 81776 632680 ~ 633195 (-) False G206850
TU234739 other downstream 81776 632692 ~ 633195 (-) True G206850
TU234735 other downstream 83395 631143 ~ 631576 (-) True G206849
TU234835 other upstream 106496 825859 ~ 827645 (-) True G206938
TU235215 other upstream 1267648 1987011 ~ 1988767 (-) True G207278
TU237643 other upstream 5308726 6028089 ~ 6028413 (-) False G209491
TU239604 other upstream 7336270 8055633 ~ 8059179 (-) False CI01000049_08056071_08059039
TU239603 other upstream 7336360 8055723 ~ 8059179 (-) True CI01000049_08056071_08059039

Expression Profile