RNA id: TU235213


Basic Information

Item Value
RNA id TU235213
length 231
lncRNA type sense_over
GC content 0.31
exon number 1
gene id CI01000049_01971492_01983341
representative True

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 1971291 ~ 1984030 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGTAATTATAGTAAAAAAAAAAAAAAATAATAAAAAAAATAGTTTCCTTTTGTGCATTTTGATCCGAGTTATAGGCTAAAAATATTAATGCAACAGGAACTTCCATCTCTACACACGTGACTGTGATTTATTGGTTGATAAGGTAGCCTATTAGGTTCCTCACATATATCAACCAATAAATCACGGGTAGCCTGTCACAGATAGTTTGTGAATTTAATACAGCCATAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235209 lncRNA downstream 2187 1981412 ~ 1981613 (-) True G207272
TU235142 lncRNA downstream 81660 1901093 ~ 1902140 (-) True G207208
TU235169 lncRNA downstream 166052 1817336 ~ 1817748 (-) True G207235
TU235162 lncRNA downstream 191474 1792008 ~ 1792326 (-) True G207228
TU235109 lncRNA downstream 326512 1638659 ~ 1657288 (-) True G207187
TU235242 lncRNA upstream 34985 2019015 ~ 2019358 (-) True G207296
TU235260 lncRNA upstream 85967 2069997 ~ 2070264 (-) True G207313
TU235228 lncRNA upstream 117248 2101278 ~ 2101705 (-) True G207286
TU235267 lncRNA upstream 157378 2141408 ~ 2141610 (-) True G207320
TU235273 lncRNA upstream 172477 2156507 ~ 2156778 (-) True G207326
CI01000049_01956684_01959474.mRNA mRNA downstream 24326 1956684 ~ 1959474 (-) True CI01000049_01956684_01959474
CI01000049_01853220_01857322.mRNA mRNA downstream 126478 1852177 ~ 1857322 (-) True CI01000049_01853220_01857322
CI01000049_01782181_01783289.mRNA mRNA downstream 199745 1781736 ~ 1784055 (-) True CI01000049_01782181_01783289
CI01000049_01773383_01778313.mRNA mRNA downstream 204991 1772768 ~ 1778809 (-) True CI01000049_01773383_01778313
CI01000049_01678202_01768140.mRNA mRNA downstream 215660 1678202 ~ 1768140 (-) True CI01000049_01678202_01768140
CI01000049_02107910_02122886.mRNA mRNA upstream 123706 2107736 ~ 2124286 (-) True CI01000049_02107910_02122886
CI01000049_02331749_02338716.mRNA mRNA upstream 347266 2331296 ~ 2338723 (-) True CI01000049_02331749_02338716
CI01000049_02519296_02524006.mRNA mRNA upstream 535047 2519077 ~ 2524006 (-) True CI01000049_02519296_02524006
CI01000049_02876185_02882477.mRNA mRNA upstream 891398 2875428 ~ 2882856 (-) True CI01000049_02876185_02882477
CI01000049_03081339_03089363.mRNA mRNA upstream 1096979 3081009 ~ 3089363 (-) True CI01000049_03081339_03089363
TU234835 other downstream 1156155 825859 ~ 827645 (-) True G206938
TU234741 other downstream 1350605 632680 ~ 633195 (-) False G206850
TU234739 other downstream 1350605 632692 ~ 633195 (-) True G206850
TU234735 other downstream 1352224 631143 ~ 631576 (-) True G206849
TU235215 other upstream 2981 1987011 ~ 1988767 (-) True G207278
TU237643 other upstream 4044059 6028089 ~ 6028413 (-) False G209491
TU239604 other upstream 6071603 8055633 ~ 8059179 (-) False CI01000049_08056071_08059039
TU239603 other upstream 6071693 8055723 ~ 8059179 (-) True CI01000049_08056071_08059039
TU239618 other upstream 6467112 8451142 ~ 8453450 (-) True CI01000049_08452153_08453389

Expression Profile