RNA id: CI01000049_03667851_03702669.mRNA


Basic Information

Item Value
RNA id CI01000049_03667851_03702669.mRNA
length 3946
RNA type mRNA
GC content 0.53
exon number 26
gene id CI01000049_03667851_03702669
representative True

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 3667851 ~ 3702669 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAGTGACCAAAAAGCGGTTTGAAAGCAAATCCTTTCGAGTGGCCTTGGAGGATGGAGTCCTTCTGTGCGATCTGATCAACACGCTGAAGCCAGGTATCATCAAGCGAGTAAACAGGCTTTCCACCCCCATTGCAGGCTTGGATAACGTGAATGTGTTTCTCAAGGCTTGTGAGAAACTAGGGCTCAATGAATCACAGCTCTTCCATCCTGGAGACCTGCAAGATGTGTCCACGCGTGTGACCGTCAGACGTGAAGAGACGAACAGGAGACTGAAAAACGTTTTGATCACTATATACTGGTTGGGGAGGAGGGCCCAGTCTGATCCGTTTTACACTGGACCACAGTTGAACCTAAAAGCCTTTGAAGGTTTGCTGGGCATAGCATTATCTAAGGCTCTGGAGGAGTCTGTGCAGTCCAGGTCAAGTGTGAGGGACAGTGGGTATGCGGAGGGCTGGTTTTCTGACAGGGAGGAACTGTTCAGTCTGAAGCAGTCGGGCTACAGTAGGGAGGACTCAGTCGAGAGCCTGGACTCAGTGGAGTCTCGCACAATCAGTGTGGCTTCAGACTGCACCCTCAGAGCCGGCAGTGAAGGTTGCTGTAGTGACGCAGAAGCGGAACATTGCTTCAGGATGGCGGAAGGCAGTAAAAGTGATGCCCCCATCAGAGAAAGGGTGCATGTCCCGTCTGCCCTGAGGAAGAAAAGACAGGAATACCAGCAGGGAGACAGAAGTTATGCAGGCCACCTCACTAGCGAAAGTGGGAGGGGCTTAGGCCACAACCTCCCCCCTGCTTCTGCCTTCCTCCAATGGGCAAGCAGTTACCAGAGTGACAGTGACTCTGACTCGGACCACCCTGAACCAGACCTTGTGCAGGACGATCTAGCAAGTCGCAGATTTCGTTCTGTAACCTCTGTGGCCCCCGTGAACTTTGCAATCCCTTCAAAGCCCCTGGGCCCCAGGGTGGCCCCTATGGTGACCCCAAGTGCTAGGAAGTCATGGCTCACCTTGTCAGATGCCTCACGGCTGGCTGCAGTGCCACCACAGAGATCAAACCAGAGTGTGTCCTCCATTCCTTCTGAAAATGGACCTCCAGACTGTGAATCTGCTACTTTGGAGGAAGAGTTTCTTCAGCGATCCCTGAACAATGGCATGAGTGACTCTGATGAGGACACAGGTTATGCTGATCCTGTGCTGGACGATCTTTACGCACGTCGGGTGCTCGTCTCCGAGCATCAGACCTCCGTCAATGCTGATTCAGACAAAAGCAAATCCATGGGTGACGTAACATTGGAGCCCATTCCCCAGGAATCTGACAACTGCTCCAGCTTTGACCCACTGGGGTCACGCCATGTTCACCAGAGGTCTTTTGGAAAGCTGACCCTTGAACCCTCCGCCAAACAGAGATTTCAAGAAGAGCAGTTACAGAACATCCGGGCCAGAATGAAGGAAAGTGAGGCCAAGTGGCACGAAGATCTGAGCAGGTGGAAGAGCCGGCGGCGGAGCACAAACTCTGACCTCCACAGAAAGCTTGAGGAGAGGGAGCAGATTGAACTTATTTGTGGGGGAGGGACCAGTGCCGTCAGGACTGCACAGCTCATCGGGGTGCCGGAGGAGAGCTACAACATGCCTGGACCCATGAGTGATGCGGGGTCCAGTGTGAGCAGTACTAGGCTAACTGGGTGGTCTACTACCTCGGCTTCACCCCTCAGGAATGGGACATCTTCTGCTCTGACCAGAGGCACTGACTTAGAGACGCCTGACTCAGCCCAAATGTGCACCGGTGAATTTTTTAACCCTTCAGCAGCTGTTGTCTCTGAACAGAGTTCATCGAGCAGCCTGGCTACCATGGATCCAGACCCCTACGAGCAGCAGGGTCCAGACTTCAGCCGCCGCGCTAGTCTCCTAGAAAGCTTTTATGCAGGGGGAGCACGCATGTCTGCCACTCTACCAAGGGGTTTCAGAAGGTCAGAAGGTTGCTCGCGCCTCTCCACAGGCGTCACACCACGTCCATTTGGAGCCAAACCCTCCAAAGTGTCCTCACTCCCCAAAGTGTATTCCATTGATGACTCTCATAAAAGCCTGATCGGTGGACACAGAGACTATTCAATCACCCCCTCTTTCCTCAGCGGTCAAGGAAAGGTCACAGCCTCTGCCGACACAGGCCACTCTCGTTCAAGCACTCATCCAATCAACCCTAAGAAAGAGGAGGAAGAGAAAAGAGATGGAAGGTCATCAGCGCCTCCCATGAACTCTTTTGTCACTAAAGTGACCATGGCCGCTTCAGTTGTACAAGCATCTCCTCCTGTTGCCTCAGAAACAAGAGAAATTAAGGTGGGTCAAAGTGAAATGCGAGTCTGCTTGAATCAGAAGCCTAACAGCGGGAGAGACTTTGGATTCAAGGCTTACTGGGACTCAACTGGTGCTTGTGTCAAATCTGTTCAAGCAGGCAGCCCAGCAGAGTTGTGTGGTCTGCTGATGGGTGATGAGATCGTGGCGTTGGGTGGATGCAGGGTGGCTGAAATGAATTATGAGCAGTTTAAGGGCAGCATGGACTCAGCACAGCAAAAGGGCACTTTACTTATGGACATCAGACGACATGGCCAAAATGGTGAGGGTGTGGAAACTGTTTACTGGGGCAGTAGCCACCCTTCCCTACCGTACAAGAGCCATAAGACCATCAATTTGACCAGTGCCAATTCAACACTTATAGGGCGGCCAGAGCACTATGTCTCGATCAGCACAACCTCAAACTCTCCAGTGGAGACTGTGGTGAAGACACAGGTCAACGGACAGCCTGCTAAAGTGCCACTGTCAGCTCCTGGGTCTATCTCTGTGCTTCAGGTTCCCTCCATCAGTACCACCTCCTCTCGCTGGTCATGGGATCATGAAGAGGAGAGGCGGCGGCAGGAGAAATGGCAGATGGAACAAGAGCGCCTCCTGCAGGAGAAGTATCGACGTGACCAGGAGAAGTTAGAGGAGGAGTGGAGAAGAGCTCAGCAGGAAGTCTATGGAGAGGAGAACAGTGGTCCTGAGGAGCTGAAATGCCTTGATGTGCTGTCCAATGGAAATACTACTCCTCATATTCCACCTCATATTGCTACCACTTCAGTGGCATCCAGTCAGATTGCAGAGAAGGTGGGAGCAGCACAGAACAGACAGGCCGCTGTGCAAATACCAGCAGGACACCAGTCATTTAAGGCAGAAGTGGAGTGCGATTCAACCACAAAGAGTCAGTGCTCAGAGGAGTCCTATGGGTTTGCCAAGCTTACAGTTTCCGACAGGGCAAAGTCAAAATCTACCCCTGCACTTGAAGGCCTTCACAAACAAGATGTTAAAGGGAGCGGTAAAAAGAAGGGACAGCTGTCGCAGGCAGAAAAGGAACGTCTGCAGATCCTGGAGGAGATGAGGAAGAAAACACAGCTCCTCACGGATGGTAGTTGGATCCGTCAGCGAAATGCCAGCATCAACAAAGAGCCCATCACTGCGGGAACATATGATTCGCTGGACAACCTCCACACAACCAGCTCCTGGTCCAGGCAGTCCTACACTTCAGGTATCTCAAACAGACCCCATTCTGCTTTGGGCAGCACTGGCACTTACAGGAGCGGACGGAGCAGCTTGGGCCCTGGCTCAGCGATCTTCAATACTGGTCTTAAACAGAGCTCCAACTTTCCCACTACGACTGAGCCCTCATTCCCTGAGTCTCGTCCAAACCCTCAGCAGCATGGCAGGCTGCTCAGTGGCAGGCGGATGTGCTCGAGGTGCGAGCAGCCTCTAGGGAAGGGAGCTGCCATGGTCATCGATTCCCTGGAGCTCTGCTTTCACATTGGTTGCTTCAAGTGTGTCAGGTGCAGGACTGACCTTGGGAGAGGGGCTGAGTCCGGAGCTCAGGTCAGAGTCAGACACGGACAGCTCTTCTGTAACACCTGCTACAGCAGAGTCAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU236002 lncRNA downstream 26300 3641141 ~ 3641551 (-) True G207990
TU235988 lncRNA downstream 35043 3631059 ~ 3632808 (-) False G207980
TU235990 lncRNA downstream 35142 3631059 ~ 3632709 (-) False G207980
TU235986 lncRNA downstream 35238 3631059 ~ 3632613 (-) False G207980
TU235991 lncRNA downstream 35392 3631059 ~ 3632459 (-) False G207980
TU236326 lncRNA upstream 54234 3756903 ~ 3760056 (-) True G208287
TU236368 lncRNA upstream 196934 3899603 ~ 3901382 (-) True G208318
TU236367 lncRNA upstream 197041 3899710 ~ 3901479 (-) True CI01000049_03901904_03904746
TU236384 lncRNA upstream 236927 3939596 ~ 3939797 (-) True G208332
TU236469 lncRNA upstream 461167 4163836 ~ 4164051 (-) True G208413
CI01000049_03256991_03257622.mRNA mRNA downstream 410229 3256855 ~ 3257622 (-) True CI01000049_03256991_03257622
CI01000049_03204366_03212170.mRNA mRNA downstream 455345 3203891 ~ 3212506 (-) True CI01000049_03204366_03212170
CI01000049_03093994_03098141.mRNA mRNA downstream 569710 3093837 ~ 3098141 (-) True CI01000049_03093994_03098141
CI01000049_03081339_03089363.mRNA mRNA downstream 578488 3081009 ~ 3089363 (-) True CI01000049_03081339_03089363
CI01000049_02876185_02882477.mRNA mRNA downstream 784995 2875428 ~ 2882856 (-) True CI01000049_02876185_02882477
CI01000049_03749311_03749697.mRNA mRNA upstream 45420 3748089 ~ 3752045 (-) True CI01000049_03749311_03749697
CI01000049_03782311_03782489.mRNA mRNA upstream 78742 3781411 ~ 3782489 (-) True CI01000049_03782311_03782489
CI01000049_03790418_03842410.mRNA mRNA upstream 87317 3789986 ~ 3842605 (-) True CI01000049_03790418_03842410
CI01000049_03864331_03867898.mRNA mRNA upstream 161340 3864009 ~ 3867967 (-) True CI01000049_03864331_03867898
CI01000049_03889930_03891510.mRNA mRNA upstream 187068 3889737 ~ 3891704 (-) True CI01000049_03889930_03891510
TU235215 other downstream 1679084 1987011 ~ 1988767 (-) True G207278
TU234835 other downstream 2840206 825859 ~ 827645 (-) True G206938
TU234741 other downstream 3034656 632680 ~ 633195 (-) False G206850
TU234739 other downstream 3034656 632692 ~ 633195 (-) True G206850
TU234735 other downstream 3036275 631143 ~ 631576 (-) True G206849
TU237643 other upstream 2325420 6028089 ~ 6028413 (-) False G209491
TU239604 other upstream 4352964 8055633 ~ 8059179 (-) False CI01000049_08056071_08059039
TU239603 other upstream 4353054 8055723 ~ 8059179 (-) True CI01000049_08056071_08059039
TU239618 other upstream 4748473 8451142 ~ 8453450 (-) True CI01000049_08452153_08453389
TU239601 other upstream 4762624 8465293 ~ 8476265 (-) True G211175

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00002183 False 3975 mRNA 0.51 27 NC_007112.7 34366849 ~ 34447515 (-)