RNA id: CI01000049_03889930_03891510.mRNA


Basic Information

Item Value
RNA id CI01000049_03889930_03891510.mRNA
length 936
RNA type mRNA
GC content 0.35
exon number 3
gene id CI01000049_03889930_03891510
representative True

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 3889737 ~ 3891704 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTACTTATGATCCAAGGAGGTGAAGATACAAGTCAAGAAATACAAGAAAAGAGAAAAACAGAGATGGTGAGAGACGTCATAAAACTTAACAGCTTACAGCGCATACTCCGTGCAAACAAAATTTACAGCTCTCAGTTTTGTATATTAACTAATAAAATATAAATACACATTTTCTGATAAGAGACATTCAACAATGGGCAACTGTGTCTTTCAGATTAAGTGCAACATTGTCGCTTCTCTCTTACTGCTATCGCTTAGTGTCAGCGGCACCACAAATGGGTCTGAGCAGCATTGTAATCCAGTGATGAAAGTGCCACGAAACACAGTGTTTAAAGCTCGTGTTATGACAGTGTTGAAGATAAACTGTACTGTGAATCTAACTGGATGTCACAGGAGCCCAAGAGTCTCATGGTGCAAAATCATTGGAAATGACTGTAAAGCTTTAAATCACTCAGATTACATAAAAACTGAGTTGAAGAAAACAACAGAGCATGAATGGATGGTTTTCATGATTTTCCTGAACATCTCAATGGAGGATGCGGGTTTATACAGATGTAAAGAAGGCGAGATGTCTGTAGGCCATGCTATTAATGTCACTGTGACATTATTAGATGATCAGAATACACTTCAAAATGATGATCAGCAGTGGCTTTGGCCATATGTTTACATCTGCAGTGGAATAGCAGGGCTGGTGTTCATAGTTATGACATTACTTTATGTTGTTGGACGCCATTGTGAGTAGTTTGAGTGTTTAAACTAAACTTTACAGTTGCTTTAAAATCACTTTTTGTTTCCTCGGTTGATATGATTTATTTCTTTATTTATTTTAGGGAGAAAATCAACAAGAAAAGATATGGCAGATAAAAATCAGGTATTATTTGTTTTAATTTTATTTGGTGTAAATCTTTATATTTGTTGAATAATACATTAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU236326 lncRNA downstream 129681 3756903 ~ 3760056 (-) True G208287
TU236283 lncRNA downstream 212933 3641999 ~ 3676804 (-) True G208246
TU236002 lncRNA downstream 248186 3641141 ~ 3641551 (-) True G207990
TU235992 lncRNA downstream 257278 3631149 ~ 3632459 (-) True G207980
TU235987 lncRNA downstream 257382 3631149 ~ 3632355 (-) False G207980
TU236368 lncRNA upstream 7899 3899603 ~ 3901382 (-) True G208318
TU236367 lncRNA upstream 8006 3899710 ~ 3901479 (-) True CI01000049_03901904_03904746
TU236384 lncRNA upstream 47892 3939596 ~ 3939797 (-) True G208332
TU236469 lncRNA upstream 272132 4163836 ~ 4164051 (-) True G208413
TU236474 lncRNA upstream 338167 4229871 ~ 4238213 (-) False G208414
CI01000049_03864331_03867898.mRNA mRNA downstream 21770 3864009 ~ 3867967 (-) True CI01000049_03864331_03867898
CI01000049_03790418_03842410.mRNA mRNA downstream 47132 3789986 ~ 3842605 (-) True CI01000049_03790418_03842410
CI01000049_03782311_03782489.mRNA mRNA downstream 107248 3781411 ~ 3782489 (-) True CI01000049_03782311_03782489
CI01000049_03749311_03749697.mRNA mRNA downstream 137692 3748089 ~ 3752045 (-) True CI01000049_03749311_03749697
CI01000049_03667851_03702669.mRNA mRNA downstream 187068 3667851 ~ 3702669 (-) True CI01000049_03667851_03702669
CI01000049_03901904_03904746.mRNA mRNA upstream 9711 3901415 ~ 3905482 (-) False CI01000049_03901904_03904746
CI01000049_03910844_03911566.mRNA mRNA upstream 19055 3910759 ~ 3911708 (-) True CI01000049_03910844_03911566
CI01000049_03926423_03936158.mRNA mRNA upstream 34658 3926362 ~ 3937709 (-) True CI01000049_03926423_03936158
CI01000049_03937868_03938590.mRNA mRNA upstream 46117 3937821 ~ 3939159 (-) True CI01000049_03937868_03938590
CI01000049_03944325_03944819.mRNA mRNA upstream 52585 3944289 ~ 3945258 (-) True CI01000049_03944325_03944819
TU235215 other downstream 1900970 1987011 ~ 1988767 (-) True G207278
TU234835 other downstream 3062092 825859 ~ 827645 (-) True G206938
TU234741 other downstream 3256542 632680 ~ 633195 (-) False G206850
TU234739 other downstream 3256542 632692 ~ 633195 (-) True G206850
TU234735 other downstream 3258161 631143 ~ 631576 (-) True G206849
TU237643 other upstream 2136385 6028089 ~ 6028413 (-) False G209491
TU239604 other upstream 4163929 8055633 ~ 8059179 (-) False CI01000049_08056071_08059039
TU239603 other upstream 4164019 8055723 ~ 8059179 (-) True CI01000049_08056071_08059039
TU239618 other upstream 4559438 8451142 ~ 8453450 (-) True CI01000049_08452153_08453389
TU239601 other upstream 4573589 8465293 ~ 8476265 (-) True G211175

Expression Profile