RNA id: CI01000049_03910844_03911566.mRNA



Basic Information


Item Value
RNA id CI01000049_03910844_03911566.mRNA
length 950
RNA type mRNA
GC content 0.41
exon number 1
gene id CI01000049_03910844_03911566
representative True

Chromosome Information


Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 3910759 ~ 3911708 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATATTCTAGGGATTAGCCCAGACTTCTCCTTATTTGTATCTTTCAAATGATATTCATACAGTGTGGACACATTACACTTCATGAAGGGTCACAACACAATCCTCATTCTAGCACTGGTTCAACGCCTCACTGCTGAAAAAAGATGAAAGCGTCCATCAGTCTCCTGATTGTCATCTGTGGACTGACTAAAGCTTTGATTAGAAAGCATTTCTATCTAAATATCCAAATGAACTGGACTGATGCTCAGAGTTACTGCAGGAAATATTACACAGATCTGTCAACAGTCACAAGTCAAGAAGAACAAGACATGCTTATACAGCTAGCAAGAGGAAACCCTTTAAACAAATGGATCGGCCTGTATAGGAACACATCCAACATCAATCAGTTTCTGTGGTCTGATGGAAATTCATTTTTGTACTCTAAGTGGCAACAAGGTCAACCCAATAATGTTAATAGAAATCAGAACTGTGTGTTCTTACATTACAATTGGTTTGACTATGAATGTTTTAAGTTACAAACTTTTTTCTGCTATAAGATGGTCTTCAGTCTTGTTAAAGAGAAGAAGACATGGGATGAAGCTCTGCAGTACTGCAGGACTCACCACACTGATCTGGCCAGCATGACCACTGAGACACAATTACAGATGGCAAAACAAGTGACAGTGGAGTCCCAGACAGAAAGTGTGTGGACGGGCCTGCGTTTCCTGGTTGGAGAATGGTTCTGGGTCAACAACGAGCCTCTGGGGGATCAAACTTTACTGCCAGAGTGCCCAGCTCAACCCTGTCGTTGTGGAGCCCGCAACACAAACACTGACAGATGGGAGATCCGAGACTGTGCGGAGAAGCTCAACTTTCTCTGCAACTGAAAACAAAGGTGAAGAAGTCGAGTTAAAAATTAACAGTGATTTAGCTAAATTTATGTAAATGGACGTTAACAAATAAGAAAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU236367 lncRNA downstream 9280 3899710 ~ 3901479 (-) True CI01000049_03901904_03904746
TU236368 lncRNA downstream 9377 3899603 ~ 3901382 (-) True G208318
TU236326 lncRNA downstream 150703 3756903 ~ 3760056 (-) True G208287
TU236283 lncRNA downstream 233955 3641999 ~ 3676804 (-) True G208246
TU236002 lncRNA downstream 269208 3641141 ~ 3641551 (-) True G207990
TU236384 lncRNA upstream 27888 3939596 ~ 3939797 (-) True G208332
TU236469 lncRNA upstream 252128 4163836 ~ 4164051 (-) True G208413
TU236474 lncRNA upstream 318163 4229871 ~ 4238213 (-) False G208414
TU236471 lncRNA upstream 326204 4237912 ~ 4259908 (-) False G208414
TU236470 lncRNA upstream 345063 4256771 ~ 4259908 (-) True G208414
CI01000049_03901904_03904746.mRNA mRNA downstream 5277 3901415 ~ 3905482 (-) False CI01000049_03901904_03904746
CI01000049_03889930_03891510.mRNA mRNA downstream 19055 3889737 ~ 3891704 (-) True CI01000049_03889930_03891510
CI01000049_03864331_03867898.mRNA mRNA downstream 42792 3864009 ~ 3867967 (-) True CI01000049_03864331_03867898
CI01000049_03790418_03842410.mRNA mRNA downstream 68154 3789986 ~ 3842605 (-) True CI01000049_03790418_03842410
CI01000049_03782311_03782489.mRNA mRNA downstream 128270 3781411 ~ 3782489 (-) True CI01000049_03782311_03782489
CI01000049_03926423_03936158.mRNA mRNA upstream 14654 3926362 ~ 3937709 (-) True CI01000049_03926423_03936158
CI01000049_03937868_03938590.mRNA mRNA upstream 26113 3937821 ~ 3939159 (-) True CI01000049_03937868_03938590
CI01000049_03944325_03944819.mRNA mRNA upstream 32581 3944289 ~ 3945258 (-) True CI01000049_03944325_03944819
CI01000049_03993313_03994107.mRNA mRNA upstream 80937 3992645 ~ 3994107 (-) True CI01000049_03993313_03994107
CI01000049_04094686_04123864.mRNA mRNA upstream 182416 4094124 ~ 4124296 (-) True CI01000049_04094686_04123864
TU235215 other downstream 1921992 1987011 ~ 1988767 (-) True G207278
TU234835 other downstream 3083114 825859 ~ 827645 (-) True G206938
TU234741 other downstream 3277564 632680 ~ 633195 (-) False G206850
TU234739 other downstream 3277564 632692 ~ 633195 (-) True G206850
TU234735 other downstream 3279183 631143 ~ 631576 (-) True G206849
TU237643 other upstream 2116381 6028089 ~ 6028413 (-) False G209491
TU239604 other upstream 4143925 8055633 ~ 8059179 (-) False CI01000049_08056071_08059039
TU239603 other upstream 4144015 8055723 ~ 8059179 (-) True CI01000049_08056071_08059039
TU239618 other upstream 4539434 8451142 ~ 8453450 (-) True CI01000049_08452153_08453389
TU239601 other upstream 4553585 8465293 ~ 8476265 (-) True G211175

Expression Profile