RNA id: CI01000049_03972425_03973129.mRNA



Basic Information


Item Value
RNA id CI01000049_03972425_03973129.mRNA
length 1602
RNA type mRNA
GC content 0.36
exon number 1
gene id CI01000049_03972425_03973129
representative True

Chromosome Information


Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 3972246 ~ 3973847 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTTTAAAAATGTATAAATCTTTGCAGGCTGCCACATGCCTGACTTCCCAACTTCTTTAAATAAACAAAATAGATGATTGTGCTGTAGGATTTGCATGTTCCATGTCAGCAGCCCAGTGAGGTTGATAAACTGTTCAGTGCGCAACCATCCTAAAACCAAACCAGCTCACTACAGCAGAGATGAAGTTGACTCTCACTGGACTTCGCCTGTTTGTCCTTTATGGACTGACTACAGGTTATAGAGTACACATTTATGTGTCCACTCCAATGACCTGCACTTCTGCTCAGACGTACTGTAAAAAGTTTTATAAAAACCTGTCTATAGTCTTTAACAAAGAGGATCTTCAGATGCTTGAAGAGGCAGCTGGAGGAACATACAACAATAGTTGGATCAACAGCCAGGAAAACGTGTGCAAGTCACTGAAGTATGAGGACACAAATACTTCAGCTACAGAATACTTATTTGAAAATCCTTCCTTTTGTGCATTCACTAATGAGGTTCGTTGGAAAAAAACATCATGTTCAAATAAATTTCCTTTCTTCTGCTATGGGAATTTCATTCTGGTGCAGGAGAATAAGACATGGGAGGAAGCTCTGGAGTTCTGCAGGAGTCACTACACTGATCTGGCCTCTTTACATTTTGATTGGCCAGTAAATCAGATTCAAAATGAGACCAATAATTCTCAGACAGACAGTGTGTGGACAGGCCTGCGCTTTCTGGATGGAAACTGGTATTGGTTGAATGTGAAGAGTGTTCAGACCGACCTCCCTCTGCCCTCATGCCCACCTGAGCCGTACCGTTGTGGAGCCCGAAACACAGAGACAGAGCGATGGGAAAACAGACACTGTGAGGAGAAGCTCAACTTTCTGTGTCTCATGAAATAAAGGCAAGTGATGAACAAACATGAATATTGCCTTCACTTCATTTGCAGATTGATTCCAGTATGTTAACAGCTGAAATATATAGTAAAAAAATAAATAAATAAATGCATCTTGTTTACTAAAATTTACAAATATGTCTTTCTTAACAGATAACTGAGCACAGAAGCATTTCTCTGCAACAAAGAGGAAGTGGCTCAGATTTCTTTCATAAACATTATTATAAACATCTACAATATACTTTTTCATTTAAGAATATGACTTTTTTGTAGTCAGCTGCAATTAAATGTTTGTAATGGAAAAGTTTTGTAATGGTAAAATTTTCAGTTTGTATAAGTCTTCTAAGATCTGAAAAAAATAGGGGGATACAGAAATTTGGAAATGAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAACCCTTTGTAATTATGTCTTAATACTTTTTGGTATTATTTCTGAGATTATAATATTTAAACTGCAAAATTAAATAATCTATATAACATTTGCAAACAGTCTCACATTAAACATGTAACAAACAACAAGTAATGGGAAAATATTATCTCTGTCTCTTGCCAGTTTTTCCAGTCTTTGCAAAGTTTAATTTAACCTTATTAGCATTTCTGTGTGTTTTCTATTTTCTGTGGATTACATGTTCTCAGGCTTTTTGCCCATTATGTTGCTGTATTTATTGATCTCCTGGACCTTTGTTTGTTCTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU236126 lncRNA upstream 31942 3940060 ~ 3940304 (+) True G208098
TU236124 lncRNA upstream 38620 3933272 ~ 3933626 (+) True G208096
TU236123 lncRNA upstream 39657 3932364 ~ 3932589 (+) True G208095
TU236118 lncRNA upstream 49367 3922426 ~ 3922879 (+) True G208090
TU236098 lncRNA upstream 70773 3899709 ~ 3901473 (+) True G208071
TU236140 lncRNA downstream 174734 4148581 ~ 4151769 (+) True G208110
TU236160 lncRNA downstream 193237 4167084 ~ 4167339 (+) True G208130
TU236174 lncRNA downstream 233522 4207369 ~ 4207846 (+) True G208144
TU236209 lncRNA downstream 344545 4318392 ~ 4318643 (+) True G208173
TU236212 lncRNA downstream 403409 4377256 ~ 4381607 (+) True G208176
CI01000049_03961350_03962120.mRNA mRNA upstream 9297 3961279 ~ 3962949 (+) True CI01000049_03961350_03962120
CI01000049_03951470_03952048.mRNA mRNA upstream 20073 3951322 ~ 3952173 (+) True CI01000049_03951470_03952048
CI01000049_03893675_03894085.mRNA mRNA upstream 77077 3892179 ~ 3895169 (+) True CI01000049_03893675_03894085
CI01000049_03872066_03885573.mRNA mRNA upstream 86006 3872066 ~ 3886240 (+) True CI01000049_03872066_03885573
CI01000049_03852103_03860363.mRNA mRNA upstream 111472 3852103 ~ 3860774 (+) True CI01000049_03852103_03860363
CI01000049_04000506_04009508.mRNA mRNA downstream 26254 4000101 ~ 4009726 (+) True CI01000049_04000506_04009508
CI01000049_04064603_04090446.mRNA mRNA downstream 90756 4064603 ~ 4090446 (+) True CI01000049_04064603_04090446
CI01000049_04219938_04257323.mRNA mRNA downstream 246091 4219938 ~ 4257323 (+) True CI01000049_04219938_04257323
CI01000049_04277549_04287107.mRNA mRNA downstream 303702 4277549 ~ 4287444 (+) True CI01000049_04277549_04287107
CI01000049_04338384_04339298.mRNA mRNA downstream 364292 4338139 ~ 4339867 (+) True CI01000049_04338384_04339298
TU236101 other upstream 90035 3877396 ~ 3882211 (+) True G208074
TU235889 other upstream 347935 3624002 ~ 3624311 (+) True G207888
TU234101 other upstream 2128418 1839815 ~ 1843828 (+) True CI01000049_01840330_01843844
TU236272 other downstream 499678 4473525 ~ 4473602 (+) True G208235
TU237839 other downstream 2904286 6878133 ~ 6882030 (+) True G209660
TU238078 other downstream 3245001 7297053 ~ 7297062 (+) True G209859
TU238335 other downstream 3899903 7873750 ~ 7878856 (+) True G210091
TU238356 other downstream 4354105 8328406 ~ 8329152 (+) True G210112

Expression Profile