RNA id: CI01000049_03993313_03994107.mRNA



Basic Information


Item Value
RNA id CI01000049_03993313_03994107.mRNA
length 1463
RNA type mRNA
GC content 0.36
exon number 1
gene id CI01000049_03993313_03994107
representative True

Chromosome Information


Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 3992645 ~ 3994107 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CAGCCCAGTGAGGTTCATAAAACTGTTCAGTGCTCAACCATCCTTAAACCAAACCAGCTCACTACAGCAGAGATGAAGTTGACTCTCACTGGACTTAGCCTGGTTGTCCTTTATGGACTGACTACAGGTTATAAAGTACACATTTATGTGTCCACTCCAATGACTGCGAATGATGCTTATACATACTGTACTACATACTATAAGGACATTTCCAGCATCACTAGCAAGGAGGAATACCAGCGTTTGGTAGAAGCAGCAAGAGGACAACTCTCTGAAGCTTGGATTGGTCTGTACAGAGGGACCAAAAATCCAAACATCTGGAAGTGGACTGATGGACAACCATATGACTTCACTAAGTTAAACATTTACAATAACAGTGATAACTGTGTATATGCTACAACGCTTCAATGGTTTAATGGGTTTTGTCCAGATAAACGTCCTTTCTTCTGCTATACCAACTATAATTTGAGCCTTGTGACAACGAATATGACTTGGGAAGATGCTCTTATGTACTGCAGGAATCAGTTTACTGACCTGGTCAGCGCAACAGAAGAGCATCAGTTGGAACTTATGCAAGATACAATCAAAAATTCCACAACAGACAGTGCATGGACAGGTTTGCGTTTCCTGGAGGGAGAATGGCACTGGGTGAGCAAGACTTTCAGACATATCCCATACCAGGGCTCACTGCTGTCATGCCCAGAAGAGCCGTACCGCTGTGGAGCCTACACCAAAACAACAGCGCAGTGGGAGATGAGAGACTGTGATGAAATGCTCAACTTCATCTGTTACTAGAGGTGAAAGTGAGTAACAGAAATTTACATTCACCTTGTACAAGTTAGTCTTTCCTGTTAAATTTAATTCTGCAGTAATAACAGATTCAATGGTTTTATTCTCTATTTAATGTATTAAAAAAATGCATACCTGTCTTTGCTTACCTCTGAATTGAAAAAAAAAAAAAAAAAAAAAAAAATCAAGCATAATTAAATGTTCCTCTGAACAGAATATTCGGTGTGCAGTGGATGAAGTTCAATTTCACACAGGTTTCCCAGCAGAACATCTTCACATAAATATGGACATGTTGCAAAGTTTGTCAAGCAGACCAGTTTGAAGAATATATCAATCCATTTGAAACCTTAAAAAGATTGGATAGGCTTTATTTTCTGTTAACTACATGCCATGGTTGAATATATTTTGTATTATTTTGTTTTTGTGTGGTTTATCAATCCAAATAGTATATATATACACATACGGATATAACTAAATTTGTTAACATTCGTAAACATTTAACAATGAACAACCTTTGTTTGCAGCATTTATTAATGTAGGTCATGTTCATTTATAAATAATTGTTAATTCATATTCATTCGTAATATAAACTAATGTTAATTTACAGAACTTGAAATATTAATGGTGTATTATATGTATAATGTAATAGAAACATTAACCTATACATTAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU236384 lncRNA downstream 52848 3939596 ~ 3939797 (-) True G208332
TU236367 lncRNA downstream 91166 3899710 ~ 3901479 (-) True CI01000049_03901904_03904746
TU236368 lncRNA downstream 91263 3899603 ~ 3901382 (-) True G208318
TU236326 lncRNA downstream 232589 3756903 ~ 3760056 (-) True G208287
TU236283 lncRNA downstream 315841 3641999 ~ 3676804 (-) True G208246
TU236469 lncRNA upstream 169729 4163836 ~ 4164051 (-) True G208413
TU236474 lncRNA upstream 235764 4229871 ~ 4238213 (-) False G208414
TU236471 lncRNA upstream 243805 4237912 ~ 4259908 (-) False G208414
TU236470 lncRNA upstream 262664 4256771 ~ 4259908 (-) True G208414
TU236521 lncRNA upstream 298760 4292867 ~ 4293095 (-) True G208459
CI01000049_03944325_03944819.mRNA mRNA downstream 47387 3944289 ~ 3945258 (-) True CI01000049_03944325_03944819
CI01000049_03937868_03938590.mRNA mRNA downstream 53486 3937821 ~ 3939159 (-) True CI01000049_03937868_03938590
CI01000049_03926423_03936158.mRNA mRNA downstream 54936 3926362 ~ 3937709 (-) True CI01000049_03926423_03936158
CI01000049_03910844_03911566.mRNA mRNA downstream 80937 3910759 ~ 3911708 (-) True CI01000049_03910844_03911566
CI01000049_03901904_03904746.mRNA mRNA downstream 87163 3901415 ~ 3905482 (-) False CI01000049_03901904_03904746
CI01000049_04094686_04123864.mRNA mRNA upstream 100017 4094124 ~ 4124296 (-) True CI01000049_04094686_04123864
CI01000049_04126260_04127962.mRNA mRNA upstream 131576 4125683 ~ 4130451 (-) True CI01000049_04126260_04127962
CI01000049_04144005_04150776.mRNA mRNA upstream 149877 4143984 ~ 4150776 (-) True CI01000049_04144005_04150776
CI01000049_04296486_04310931.mRNA mRNA upstream 301019 4295126 ~ 4313107 (-) True CI01000049_04296486_04310931
CI01000049_04341160_04342702.mRNA mRNA upstream 346951 4341058 ~ 4342702 (-) True CI01000049_04341160_04342702
TU235215 other downstream 2003878 1987011 ~ 1988767 (-) True G207278
TU234835 other downstream 3165000 825859 ~ 827645 (-) True G206938
TU234741 other downstream 3359450 632680 ~ 633195 (-) False G206850
TU234739 other downstream 3359450 632692 ~ 633195 (-) True G206850
TU234735 other downstream 3361069 631143 ~ 631576 (-) True G206849
TU237643 other upstream 2033982 6028089 ~ 6028413 (-) False G209491
TU239604 other upstream 4061526 8055633 ~ 8059179 (-) False CI01000049_08056071_08059039
TU239603 other upstream 4061616 8055723 ~ 8059179 (-) True CI01000049_08056071_08059039
TU239618 other upstream 4457035 8451142 ~ 8453450 (-) True CI01000049_08452153_08453389
TU239601 other upstream 4471186 8465293 ~ 8476265 (-) True G211175

Expression Profile