RNA id: CI01000049_09483465_09491174.mRNA


Basic Information

Item Value
RNA id CI01000049_09483465_09491174.mRNA
length 2526
RNA type mRNA
GC content 0.47
exon number 6
gene id CI01000049_09483465_09491174
representative True

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 9483333 ~ 9491945 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAGTGATCCATCACTCTTTCACTCTGTTGTGAGGAAAGATTGCAGTAAAAGTTCCGTTTGGTTCACCATAATAACATCCTGTATCTAAAAATATTCCATTATCACTCTTTCCACATTCAGGTCCTTAAAACAATAAACTTCTCTTATGAGGTCTGTCCAACATCAGGTGCATCTTTTTTTTCTTTTGGCTGTCACACATAAGCTGTTGTTTATGTGGAGACCTTGCCTGAAAAGCCTGAACGGAAATGTGAAGAGCACATTAATATCCTTGTGGCTGTCACAGTGTAATTATTTTCACAGCCACATACAGACCTTTTCCATTCACTTGTGTAATAGACTCTGTGCAATGACATTTTACATTCTCTAGTATGTTGTTGCGAGTCTGTTGTCCTGTTTGACACGGTGTCCTCAGATGGGTGAAGACAAAATGAGAATCAAATTTACACTTCACTGGCATTTTTGCCTTATCTTCATTCTTATTTAGCACTGCAGTGGTGATATAATCACTCTCAACTCATACACAAGAGGTTGGAGATAAGACACCTTATTTTGTGAATAGTGTTATTTAAGGTTGTGCTTTGAAAAGACACCATGTTGCAGTCAGTCCTTTAAACCACATGCTCAAAGATGTAAAGTTCTGTATCTTTGATGCATTCTTTTCCTGTTAATAATCTCTATTATTAGTCTTGCTGGAGGGCTTGGTGTTTGCTCTAATGGTTTCTCCTCATCTCACCCTTCCCCAGATTCCCTAGAAGAAGAGCTTGGACGGCATGCAAAGTTGTGAAATATCTTCAGACAGCACTGATGATCCTCTTAGTAGAGCCCTACACAGACATCGACAACCGCGAATAGTAGTGATTGGCGCGGGCTTGGCCGGCCTTGCCGCCACCAAAACCCTCTTGGAGAACGGCTTCACCAATGTCACGGTGCTAGAAGCCTCGGACCGTATCGGAGGCAGAGTGCAAAGCATTCAGCACGGTAAAACCACTTTGGAACTTGGAGCAACCTGGATACATGGGGCAAATGGGAACCCCATCTACCACCTGGCTGAGGAAAATGGGCTGCTGGAGCACACCACAGAGGAGGAGAGGAGTGTGGGCCGCATCAGCCTCTACGCCAAGAATGGTGTGGCCCACTACCAGACCAACAACGGCAAGCGGATCCCAAAGGATCTGGTGGAGGAGTTCAGTGACCTGTACAATGAGGTGTACGAGCTGACTCAAGAGTTCTTCCAGAACGGAAAGCCTGTGGGAGCCGAGAGTCAAAACAGTGTGGGGATCTTCACACGAGATGTGTTGCGCAAGAAGATCATGCTTGATCCTTATGACACAGAGAGCACCAAGAAACTTAAGTTATCTATGCTACAACAGTACCTCAAGGTGGAAAGCTGTGAAAGCAGTTCCCCCAGCATGGACGAAGTGTCTCTAAGTGAGTTTGGTGAGTGGACCGAGATTCCCGGTGCTCACCATGTCATTCCTGTTGGTTTCATTAAAGTCGTTGAGATCCTGGCTCAGGACATCCCAAGTCGTGTCCTCCGCCTCAGCAAGCCTGTCCGCCGCATCCATTGGAACTGCAGCTCCCAGGATGCAGAGGAAATTGCCGACCAGGCTGACCATAACCAGGACCAACGGCCCAGCCCTTCGCCAGTCTGTGTGGAGTGCGAAGACGCAGAGTGTCTGCTGGCAGACCATGTGATCGTAACGGCCTCTCTTGGGTTCCTGAAGAAAGCTCATGAGACTCTCTTCTCCCCAGGCCTGCCACAAGACAAGGCACAGGCCGTCCAGAAACTGGGCATTAGTACCACCGACAAGATCTTTCTGGAGTTTGCAGAGCCCTTTTGGAGCCCCGAATGCAACAGCATTCAGTTTGTTTGGGAGGACGAGGCACAACTGGAGAGCCAGGCATACCCAGAAGAGCTGTGGTATCGAAAGATCTGCAGCTTTGATGTGCTGTATCCGCCTGAGCGCTATGGCCACATGTTGAGTGGCTGGATCTGCGGTGAAGAGGCTCTGCGCATGGAAAGGTGTGACGACGAGACTGTGGCGGAGATATGCACTGAACTACTACGCCAGTTCACAGGGAACCAGAATATTCCTAAGCCAAGGCGGATTCTGCGCTCCTCGTGGGGCAGTAATCCCTATATCCGGGGTTCTTACTCCTTCACTCAAGTAGGCTCCAGCGGCAGAGATGTGGAGAGGCTAGCTGAGCCCCTGCCTTATATTAAGAACACTAAGGCTCCGCCTCTACAGGTGTTGTTTGCTGGGGAGGCCACCCATAGAAAATACTATTCCACTACCCATGGTGCTTTGTTGTCAGGACAGAGGGAGGCCAACCGCTTGATTGAGCTGTACCAGTACTCCTTCGGTGCAGAAACCACAAAGCCTAACATTTAAAAAAAACAAATTGCAACAAAAACAAGAACCACTTACTAGTGACAAAAACAATTGTGTTATGTGCTATCTGTATTTCAAATGATTTAATTATGTATGAAAACCTAGTAGGGGCATTAAACTAATAACAATAAA

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process

KEGG:

id description
K12259 SMOX, PAO5; spermine oxidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240425 lncRNA downstream 5132 9477988 ~ 9478201 (-) True G211932
TU240409 lncRNA downstream 50949 9432105 ~ 9432384 (-) True G211916
TU240139 lncRNA downstream 165723 9317375 ~ 9317610 (-) True G211683
TU240120 lncRNA downstream 177748 9305361 ~ 9305585 (-) True G211664
TU240098 lncRNA downstream 206459 9276670 ~ 9276874 (-) True G211642
TU240434 lncRNA upstream 17727 9509672 ~ 9509946 (-) True G211941
TU240458 lncRNA upstream 133711 9625656 ~ 9625896 (-) True G211964
CI01000049_09458632_09476364.mRNA mRNA downstream 6969 9458632 ~ 9476364 (-) True CI01000049_09458632_09476364
CI01000049_09436515_09437579.mRNA mRNA downstream 45683 9436484 ~ 9437650 (-) True CI01000049_09436515_09437579
CI01000049_09258155_09261544.mRNA mRNA downstream 221202 9257387 ~ 9262131 (-) True CI01000049_09258155_09261544
CI01000049_09118560_09206979.mRNA mRNA downstream 275870 9118219 ~ 9207463 (-) True CI01000049_09118560_09206979
CI01000049_08933235_08933525.mRNA mRNA downstream 549798 8932800 ~ 8933535 (-) True CI01000049_08933235_08933525
CI01000049_09561984_09598361.mRNA mRNA upstream 69834 9561779 ~ 9598361 (-) True CI01000049_09561984_09598361
CI01000049_09627488_09629074.mRNA mRNA upstream 135461 9627406 ~ 9629307 (-) True CI01000049_09627488_09629074
CI01000049_09638562_09659340.mRNA mRNA upstream 146587 9638532 ~ 9660433 (-) True CI01000049_09638562_09659340
CI01000049_09661601_09665293.mRNA mRNA upstream 169182 9661127 ~ 9665293 (-) True CI01000049_09661601_09665293
TU239601 other downstream 1007068 8465293 ~ 8476265 (-) True G211175
TU239618 other downstream 1029883 8451142 ~ 8453450 (-) True CI01000049_08452153_08453389
TU239604 other downstream 1424154 8055633 ~ 8059179 (-) False CI01000049_08056071_08059039
TU239603 other downstream 1424154 8055723 ~ 8059179 (-) True CI01000049_08056071_08059039
TU237643 other downstream 3454920 6028089 ~ 6028413 (-) False G209491

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00000874 False 2220 mRNA 0.48 7 NC_007112.7 41849152 ~ 41865986 (+)
bowfin (Amia calva) AMCG00017433 True 2788 mRNA 0.49 8 CM030131.1 4281484 ~ 4299779 (-)