RNA id: TU233418


Basic Information

Item Value
RNA id TU233418
length 217
lncRNA type antisense_over
GC content 0.49
exon number 1
gene id G205624
representative True

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 326434 ~ 326650 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGAAGAGGTCATAATCGAACAGGCCTTCTCCAAAGAACTGATCGAAGAGCCGGGTGGGGTAGCCCATGGTGCGTCTGATCCAGGGGTGTTGGATGGCAATATCCATAATGTCAGGCTTGGAAACTCTCAACTTCGATTAGCTAAAAGTGGACTGGCAAATCTCAGCGATTTGAGCCTGACTGTGGCTATTTGCTCCTGATGTCGAGGAAATTTTCGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233401 lncRNA downstream 67444 258447 ~ 258990 (-) True G205607
TU233388 lncRNA downstream 104539 221674 ~ 221895 (-) True G205594
TU233285 lncRNA downstream 131194 164360 ~ 195240 (-) False G205495
TU233420 lncRNA upstream 2243 328893 ~ 329165 (-) True G205626
TU233422 lncRNA upstream 3106 329756 ~ 329978 (-) True G205628
TU233435 lncRNA upstream 75865 402515 ~ 402976 (-) True G205638
TU233332 lncRNA upstream 80499 407149 ~ 409068 (-) True G205538
TU233311 lncRNA upstream 93620 420270 ~ 425652 (-) True G205517
CI01000049_00297474_00300898.mRNA mRNA downstream 25396 297264 ~ 301038 (-) True CI01000049_00297474_00300898
CI01000049_00246668_00252556.mRNA mRNA downstream 73878 246557 ~ 252556 (-) True CI01000049_00246668_00252556
CI01000049_00175772_00192995.mRNA mRNA downstream 133318 175712 ~ 193116 (-) False CI01000049_00175772_00192995
CI01000049_00062863_00075679.mRNA mRNA downstream 249902 62696 ~ 76532 (-) True CI01000049_00062863_00075679
CI01000049_00330959_00338938.mRNA mRNA upstream 4057 330707 ~ 341230 (-) True CI01000049_00330959_00338938
CI01000049_00345414_00349493.mRNA mRNA upstream 18759 345409 ~ 349655 (-) True CI01000049_00345414_00349493
CI01000049_00375347_00377699.mRNA mRNA upstream 48386 375036 ~ 377831 (-) True CI01000049_00375347_00377699
CI01000049_00400682_00411259.mRNA mRNA upstream 74017 400667 ~ 411259 (-) True CI01000049_00400682_00411259
CI01000049_00715243_00718107.mRNA mRNA upstream 388321 714971 ~ 719363 (-) True CI01000049_00715243_00718107
TU234735 other upstream 304493 631143 ~ 631576 (-) True G206849
TU234741 other upstream 306030 632680 ~ 633195 (-) False G206850
TU234739 other upstream 306042 632692 ~ 633195 (-) True G206850
TU234835 other upstream 499209 825859 ~ 827645 (-) True G206938
TU235215 other upstream 1660361 1987011 ~ 1988767 (-) True G207278

Expression Profile