RNA id: TU233422


Basic Information

Item Value
RNA id TU233422
length 223
lncRNA type antisense_over
GC content 0.40
exon number 1
gene id G205628
representative True

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 329756 ~ 329978 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGACAAACATGGTATGTCTAATGGTTAATGGTACAACTTTATTTTTTTAATCACTTTTTAGTAGACCCCCGAGGAGTCTGTAATCAGTAGAACCTACAAAACAGGAAAGAGTCAATGACAAGAGAGATCTAGAAAAGAAGTCTTGACACAGGTAAGAGAGGAAACGGAGGTCTGACTGGTGCCAGTGATGGAATCTCTCTCGGATCAGAAATCTTCAAACAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233420 lncRNA downstream 591 328893 ~ 329165 (-) True G205626
TU233418 lncRNA downstream 3106 326434 ~ 326650 (-) True G205624
TU233401 lncRNA downstream 70766 258447 ~ 258990 (-) True G205607
TU233388 lncRNA downstream 107861 221674 ~ 221895 (-) True G205594
TU233272 lncRNA downstream 134516 194331 ~ 195240 (-) True G205495
TU233435 lncRNA upstream 72537 402515 ~ 402976 (-) True G205638
TU233332 lncRNA upstream 77171 407149 ~ 409068 (-) True G205538
TU233311 lncRNA upstream 90292 420270 ~ 425652 (-) True G205517
TU233438 lncRNA upstream 96892 426870 ~ 427081 (-) True G205641
TU233452 lncRNA upstream 108824 438802 ~ 439112 (-) True G205653
CI01000049_00297474_00300898.mRNA mRNA downstream 28718 297264 ~ 301038 (-) True CI01000049_00297474_00300898
CI01000049_00246668_00252556.mRNA mRNA downstream 77200 246557 ~ 252556 (-) True CI01000049_00246668_00252556
CI01000049_00175772_00192995.mRNA mRNA downstream 136640 175712 ~ 193116 (-) False CI01000049_00175772_00192995
CI01000049_00062863_00075679.mRNA mRNA downstream 253224 62696 ~ 76532 (-) True CI01000049_00062863_00075679
CI01000049_00330959_00338938.mRNA mRNA upstream 729 330707 ~ 341230 (-) True CI01000049_00330959_00338938
CI01000049_00345414_00349493.mRNA mRNA upstream 15431 345409 ~ 349655 (-) True CI01000049_00345414_00349493
CI01000049_00375347_00377699.mRNA mRNA upstream 45058 375036 ~ 377831 (-) True CI01000049_00375347_00377699
CI01000049_00400682_00411259.mRNA mRNA upstream 70689 400667 ~ 411259 (-) True CI01000049_00400682_00411259
CI01000049_00715243_00718107.mRNA mRNA upstream 384993 714971 ~ 719363 (-) True CI01000049_00715243_00718107
TU234735 other upstream 301165 631143 ~ 631576 (-) True G206849
TU234741 other upstream 302702 632680 ~ 633195 (-) False G206850
TU234739 other upstream 302714 632692 ~ 633195 (-) True G206850
TU234835 other upstream 495881 825859 ~ 827645 (-) True G206938
TU235215 other upstream 1657033 1987011 ~ 1988767 (-) True G207278

Expression Profile