RNA id: TU233449


Basic Information

Item Value
RNA id TU233449
length 1374
lncRNA type antisense_over
GC content 0.31
exon number 3
gene id G205650
representative False

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 439336 ~ 458587 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTCCTTAAATAACAATATTTATTTGTATTATTGCATGTGACTATCTTTTGCAACACAAACAAAAGCAATATTCATCTAGGATATTTTAAATGATCTCTCAACAGCATAACAATGAACAGTATGTGACATTTGTACAATGGAAGACACAGCTTGTTCAATTAAACCTGGCAAATATTGAAAATATATTAACCCTTTGATACATACAAACAATAGATATTTATTTTTATACTTAGACTCAAGATCTTCAAGAACACTGTTGAATATATATATATATATAGTTTTTTTCATAAAGCAAAATAAAACAAGCTTTAAAAGTTGGCAGAAAGAAATGTACAAACAGCATAAATTCAATATCTCTGTAAAATATTTTAACAAATATATTAACATAATATTTATACATTTGGTTCCACTTTGTAAACTAATCTGATTTGTAAGTATTGCATATACAAAGAGTGAATGAATGCTACCCAAGAAGCAAGTAGAATGAGTACCATTACCTCAAGAAATTACACAATAAAGTGGCATGTGTCACTTTAAACATAAAATTAACACTCTTTTTTAGGACTTTAAACATAAAATTAAAAAAAAAAAAAAGCATCAACACGTCTACATCAGTGCTATACATATGTTTTTAGATAAGGGATTTATTCAGTTTTAAACAAATCACGTTTCACCAATGCAATGCGTAGTATCTTGCATTTTGTTATTTGCTTAGCAGTTTATTTGCTTAGTATTTTTATATAAGACACTATTGCGTAGGAGGAGAAGTATTTTAAATGTCATGAAAATGTTAAGCAGATCACATTTTTGTATTTAGTTCACAACATTCAGGGAAAAGCAGACAATGGCTAAAATTACTCCTGTTGTGAAAATTTTTTCTGCCCCACTAATCTGTTCACTCATACTGTATAAGTGGGTTTGTGCTCTACATTCAGACACGTCATGTGTTACAATCTAGTTGAATGAGACATCACTGCGATATTATCAACAGAGAGCCAATGTGAGCGGATTAAGACAGTCACCAACTTGGTGCAGTGCATGTCTTTATCCATGCTATTTCTACACAAATGGGAACTAGTCATTGTTATCATATATTATATTACTGTTGAATGCAATTCTTGAGGCAGAGGAACAGGGAATGGCCATGATTTACGCAACAAGGTGAGAAAGTGACAATGAATCTGAGGAAACAGGAGCGAAAGGTTGACCATATTTGGTCATAAATATACATCCGTAGTAAAAGAGATTTAAACTTAAATATCCGAGAAATTGAGATTTCAGCGCTGTTTCACCATGCGACGTCTATTTGTTCACAGCAAATAACTCCTCACTCAGAATGACTGAGCTTAAGAAAAAAACAACATGTGACGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233452 lncRNA downstream 224 438802 ~ 439112 (-) True G205653
TU233438 lncRNA downstream 12255 426870 ~ 427081 (-) True G205641
TU233311 lncRNA downstream 13684 420270 ~ 425652 (-) True G205517
TU233332 lncRNA downstream 30268 407149 ~ 409068 (-) True G205538
TU233435 lncRNA downstream 36360 402515 ~ 402976 (-) True G205638
TU233457 lncRNA upstream 3401 461988 ~ 462290 (-) True G205658
TU233458 lncRNA upstream 3951 462538 ~ 462982 (-) True G205659
TU233531 lncRNA upstream 129553 588140 ~ 588381 (-) True G205730
TU234732 lncRNA upstream 154263 612850 ~ 613064 (-) True G206847
TU234743 lncRNA upstream 175426 634013 ~ 634271 (-) True G206851
CI01000049_00400682_00411259.mRNA mRNA downstream 28077 400667 ~ 411259 (-) True CI01000049_00400682_00411259
CI01000049_00375347_00377699.mRNA mRNA downstream 61505 375036 ~ 377831 (-) True CI01000049_00375347_00377699
CI01000049_00345414_00349493.mRNA mRNA downstream 89681 345409 ~ 349655 (-) True CI01000049_00345414_00349493
CI01000049_00330959_00338938.mRNA mRNA downstream 98106 330707 ~ 341230 (-) True CI01000049_00330959_00338938
CI01000049_00297474_00300898.mRNA mRNA downstream 138298 297264 ~ 301038 (-) True CI01000049_00297474_00300898
CI01000049_00715243_00718107.mRNA mRNA upstream 256384 714971 ~ 719363 (-) True CI01000049_00715243_00718107
CI01000049_00720262_00721411.mRNA mRNA upstream 261667 720254 ~ 721411 (-) True CI01000049_00720262_00721411
CI01000049_00732479_00766646.mRNA mRNA upstream 273892 732479 ~ 766646 (-) True CI01000049_00732479_00766646
CI01000049_00769434_00772846.mRNA mRNA upstream 310593 769180 ~ 772846 (-) True CI01000049_00769434_00772846
CI01000049_00841319_00845716.mRNA mRNA upstream 381136 839723 ~ 845716 (-) True CI01000049_00841319_00845716
TU234735 other upstream 172556 631143 ~ 631576 (-) True G206849
TU234741 other upstream 174093 632680 ~ 633195 (-) False G206850
TU234739 other upstream 174105 632692 ~ 633195 (-) True G206850
TU234835 other upstream 367272 825859 ~ 827645 (-) True G206938
TU235215 other upstream 1528424 1987011 ~ 1988767 (-) True G207278

Expression Profile