RNA id: TU234732


Basic Information

Item Value
RNA id TU234732
length 215
lncRNA type intronic
GC content 0.40
exon number 1
gene id G206847
representative True

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 612850 ~ 613064 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAATTATGGAGCTGCCTTCGCACGCATCTTGCTTTCACATGGTGCCTCCCGGAAGTCCAGTTTGTTTTCTTTAATCAATATGTGTTTCTTTGTTCTATTTTCCCGCCACAATTCGTCACCATGGACACTGCACTAATCATCACAGCTGTTTGTCATTTGAGTTAATCGTCTGTGTCTCATTTCTGGTCTCATTTCTATTACAGTTGTGTTTGAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233531 lncRNA downstream 24469 588140 ~ 588381 (-) True G205730
TU233458 lncRNA downstream 149868 462538 ~ 462982 (-) True G205659
TU233457 lncRNA downstream 150560 461988 ~ 462290 (-) True G205658
TU233449 lncRNA downstream 154263 439336 ~ 458587 (-) False G205650
TU233448 lncRNA downstream 154263 456294 ~ 458587 (-) True G205650
TU234743 lncRNA upstream 20949 634013 ~ 634271 (-) True G206851
TU234744 lncRNA upstream 28419 641483 ~ 641749 (-) True G206852
TU234745 lncRNA upstream 28853 641917 ~ 642162 (-) True G206853
TU234746 lncRNA upstream 29285 642349 ~ 642548 (-) True G206854
TU234749 lncRNA upstream 33509 646573 ~ 646822 (-) True G206857
CI01000049_00400682_00411259.mRNA mRNA downstream 201591 400667 ~ 411259 (-) True CI01000049_00400682_00411259
CI01000049_00375347_00377699.mRNA mRNA downstream 235019 375036 ~ 377831 (-) True CI01000049_00375347_00377699
CI01000049_00345414_00349493.mRNA mRNA downstream 263195 345409 ~ 349655 (-) True CI01000049_00345414_00349493
CI01000049_00330959_00338938.mRNA mRNA downstream 271620 330707 ~ 341230 (-) True CI01000049_00330959_00338938
CI01000049_00297474_00300898.mRNA mRNA downstream 311812 297264 ~ 301038 (-) True CI01000049_00297474_00300898
CI01000049_00715243_00718107.mRNA mRNA upstream 101907 714971 ~ 719363 (-) True CI01000049_00715243_00718107
CI01000049_00720262_00721411.mRNA mRNA upstream 107190 720254 ~ 721411 (-) True CI01000049_00720262_00721411
CI01000049_00732479_00766646.mRNA mRNA upstream 119415 732479 ~ 766646 (-) True CI01000049_00732479_00766646
CI01000049_00769434_00772846.mRNA mRNA upstream 156116 769180 ~ 772846 (-) True CI01000049_00769434_00772846
CI01000049_00841319_00845716.mRNA mRNA upstream 226659 839723 ~ 845716 (-) True CI01000049_00841319_00845716
TU234735 other upstream 18079 631143 ~ 631576 (-) True G206849
TU234741 other upstream 19616 632680 ~ 633195 (-) False G206850
TU234739 other upstream 19628 632692 ~ 633195 (-) True G206850
TU234835 other upstream 212795 825859 ~ 827645 (-) True G206938
TU235215 other upstream 1373947 1987011 ~ 1988767 (-) True G207278

Expression Profile