RNA id: TU234743


Basic Information

Item Value
RNA id TU234743
length 259
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G206851
representative True

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 634013 ~ 634271 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTGGGGATCCCCTTCAGCGTAAGCGCTCCTGAAGACGTGTACAACTAGTCCAATCGTGATTGGTGCAACGTCATCCCATGACGTATGCCGGCGGAACGTGGAAGCTATAAAAGAGCTGTCAAACACAGCTGTTTCAGCTTTCTGATCTTCAGCAAGCGTTCTGTGTCTCTGTCCGTCTTATTTGGTGTTGTTTGTCCCGTAAAGAAAAAAAAAGCTACATATTACTTAGAAATGGCGAGTGAAAGCAGTGAGCAAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234732 lncRNA downstream 20949 612850 ~ 613064 (-) True G206847
TU233531 lncRNA downstream 45632 588140 ~ 588381 (-) True G205730
TU233458 lncRNA downstream 171031 462538 ~ 462982 (-) True G205659
TU233457 lncRNA downstream 171723 461988 ~ 462290 (-) True G205658
TU233449 lncRNA downstream 175426 439336 ~ 458587 (-) False G205650
TU234744 lncRNA upstream 7212 641483 ~ 641749 (-) True G206852
TU234745 lncRNA upstream 7646 641917 ~ 642162 (-) True G206853
TU234746 lncRNA upstream 8078 642349 ~ 642548 (-) True G206854
TU234749 lncRNA upstream 12302 646573 ~ 646822 (-) True G206857
TU234783 lncRNA upstream 68176 702447 ~ 702660 (-) True G206886
CI01000049_00400682_00411259.mRNA mRNA downstream 222754 400667 ~ 411259 (-) True CI01000049_00400682_00411259
CI01000049_00375347_00377699.mRNA mRNA downstream 256182 375036 ~ 377831 (-) True CI01000049_00375347_00377699
CI01000049_00345414_00349493.mRNA mRNA downstream 284358 345409 ~ 349655 (-) True CI01000049_00345414_00349493
CI01000049_00330959_00338938.mRNA mRNA downstream 292783 330707 ~ 341230 (-) True CI01000049_00330959_00338938
CI01000049_00297474_00300898.mRNA mRNA downstream 332975 297264 ~ 301038 (-) True CI01000049_00297474_00300898
CI01000049_00715243_00718107.mRNA mRNA upstream 80700 714971 ~ 719363 (-) True CI01000049_00715243_00718107
CI01000049_00720262_00721411.mRNA mRNA upstream 85983 720254 ~ 721411 (-) True CI01000049_00720262_00721411
CI01000049_00732479_00766646.mRNA mRNA upstream 98208 732479 ~ 766646 (-) True CI01000049_00732479_00766646
CI01000049_00769434_00772846.mRNA mRNA upstream 134909 769180 ~ 772846 (-) True CI01000049_00769434_00772846
CI01000049_00841319_00845716.mRNA mRNA upstream 205452 839723 ~ 845716 (-) True CI01000049_00841319_00845716
TU234741 other downstream 818 632680 ~ 633195 (-) False G206850
TU234739 other downstream 818 632692 ~ 633195 (-) True G206850
TU234735 other downstream 2437 631143 ~ 631576 (-) True G206849
TU234835 other upstream 191588 825859 ~ 827645 (-) True G206938
TU235215 other upstream 1352740 1987011 ~ 1988767 (-) True G207278
TU237643 other upstream 5393818 6028089 ~ 6028413 (-) False G209491
TU239604 other upstream 7421362 8055633 ~ 8059179 (-) False CI01000049_08056071_08059039
TU239603 other upstream 7421452 8055723 ~ 8059179 (-) True CI01000049_08056071_08059039

Expression Profile