RNA id: TU234745


Basic Information

Item Value
RNA id TU234745
length 246
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G206853
representative True

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 641917 ~ 642162 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGAGTCACAGCCTGCACCCTCCAATTACAACACATCATCACCAGATCTTCACGCTCCACCCACTCGTTCACAATCCCCTGAGTTCTGATCACCTGCACCTCATCACCAGTGACACTTTAAAAGACTCTCACTCCCTGCACTCAGTGTCTGGTCTCGTCAGACTCATGGACTACTCACCCGCTACTTACCAGCGTCTTCTTGTGCCTCCCTCCTCTCGTCTTCCGTCTCCAGTCATCAGCTCCATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234744 lncRNA downstream 168 641483 ~ 641749 (-) True G206852
TU234743 lncRNA downstream 7646 634013 ~ 634271 (-) True G206851
TU234732 lncRNA downstream 28853 612850 ~ 613064 (-) True G206847
TU233531 lncRNA downstream 53536 588140 ~ 588381 (-) True G205730
TU233458 lncRNA downstream 178935 462538 ~ 462982 (-) True G205659
TU234746 lncRNA upstream 187 642349 ~ 642548 (-) True G206854
TU234749 lncRNA upstream 4411 646573 ~ 646822 (-) True G206857
TU234783 lncRNA upstream 60285 702447 ~ 702660 (-) True G206886
TU234845 lncRNA upstream 137850 780012 ~ 780570 (-) False G206948
TU234847 lncRNA upstream 137850 780012 ~ 780302 (-) True G206948
CI01000049_00400682_00411259.mRNA mRNA downstream 230658 400667 ~ 411259 (-) True CI01000049_00400682_00411259
CI01000049_00375347_00377699.mRNA mRNA downstream 264086 375036 ~ 377831 (-) True CI01000049_00375347_00377699
CI01000049_00345414_00349493.mRNA mRNA downstream 292262 345409 ~ 349655 (-) True CI01000049_00345414_00349493
CI01000049_00330959_00338938.mRNA mRNA downstream 300687 330707 ~ 341230 (-) True CI01000049_00330959_00338938
CI01000049_00297474_00300898.mRNA mRNA downstream 340879 297264 ~ 301038 (-) True CI01000049_00297474_00300898
CI01000049_00715243_00718107.mRNA mRNA upstream 72809 714971 ~ 719363 (-) True CI01000049_00715243_00718107
CI01000049_00720262_00721411.mRNA mRNA upstream 78092 720254 ~ 721411 (-) True CI01000049_00720262_00721411
CI01000049_00732479_00766646.mRNA mRNA upstream 90317 732479 ~ 766646 (-) True CI01000049_00732479_00766646
CI01000049_00769434_00772846.mRNA mRNA upstream 127018 769180 ~ 772846 (-) True CI01000049_00769434_00772846
CI01000049_00841319_00845716.mRNA mRNA upstream 197561 839723 ~ 845716 (-) True CI01000049_00841319_00845716
TU234741 other downstream 8722 632680 ~ 633195 (-) False G206850
TU234739 other downstream 8722 632692 ~ 633195 (-) True G206850
TU234735 other downstream 10341 631143 ~ 631576 (-) True G206849
TU234835 other upstream 183697 825859 ~ 827645 (-) True G206938
TU235215 other upstream 1344849 1987011 ~ 1988767 (-) True G207278
TU237643 other upstream 5385927 6028089 ~ 6028413 (-) False G209491
TU239604 other upstream 7413471 8055633 ~ 8059179 (-) False CI01000049_08056071_08059039
TU239603 other upstream 7413561 8055723 ~ 8059179 (-) True CI01000049_08056071_08059039

Expression Profile