RNA id: TU234845


Basic Information

Item Value
RNA id TU234845
length 559
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G206948
representative False

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 780012 ~ 780570 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCCGTTTGTCTTAAAGTGGTGGAACATAGTGCAGAACAAAGTGCAGCCATTAAGTTGCTCCAACAGAGCATTGTGAATCAAAAAGTTAAATTACATTGTTCATTAGAAAAAATTACTCCTATATGTGATCCTGGAGCACAAAACCAGTAAGAAGTCGCACGGGTATATTTGTAGCAATAGCCAACAATACATTGTATGAGTCAAAATGACAGATTTTTCTTTTATGGCAAAAATCATTAGGATATTAAGTAAAGATCATGTTCCATAAAGATATTTTGTAAATTTTCTACCGTAAATGTATAAAAAATTATTTTTGTGAATGGATATACATTGTTAAGGACTTCATCTGGACAACTTTAAAGGCAATTTTCTCAATATTTTGATTTTTTTTCACCTTAAGATTCCAAATTTTCAAATAGTTGTGTCTTGGCCAAATGTCCTATCCTAACAAACCATACATCAATGGAAAGCTTATATATATTCAGCTTTCAGATGATGTATAAATCTCAATTTCAAAAAATTGACCCTTATGACTGGTTTTGTAGTCCAGGGTCACATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234783 lncRNA downstream 77352 702447 ~ 702660 (-) True G206886
TU234749 lncRNA downstream 133190 646573 ~ 646822 (-) True G206857
TU234746 lncRNA downstream 137464 642349 ~ 642548 (-) True G206854
TU234745 lncRNA downstream 137850 641917 ~ 642162 (-) True G206853
TU234744 lncRNA downstream 138263 641483 ~ 641749 (-) True G206852
TU234849 lncRNA upstream 204 780774 ~ 780980 (-) True G206949
TU234833 lncRNA upstream 1165 781735 ~ 796259 (-) True G206936
TU234859 lncRNA upstream 16185 796755 ~ 797602 (-) True G206959
TU234822 lncRNA upstream 42026 822596 ~ 824576 (-) True G206925
TU234872 lncRNA upstream 49620 830190 ~ 830475 (-) True G206972
CI01000049_00769434_00772846.mRNA mRNA downstream 7166 769180 ~ 772846 (-) True CI01000049_00769434_00772846
CI01000049_00732479_00766646.mRNA mRNA downstream 13366 732479 ~ 766646 (-) True CI01000049_00732479_00766646
CI01000049_00720262_00721411.mRNA mRNA downstream 58601 720254 ~ 721411 (-) True CI01000049_00720262_00721411
CI01000049_00715243_00718107.mRNA mRNA downstream 60649 714971 ~ 719363 (-) True CI01000049_00715243_00718107
CI01000049_00400682_00411259.mRNA mRNA downstream 368753 400667 ~ 411259 (-) True CI01000049_00400682_00411259
CI01000049_00841319_00845716.mRNA mRNA upstream 59153 839723 ~ 845716 (-) True CI01000049_00841319_00845716
CI01000049_00848509_00854128.mRNA mRNA upstream 67088 847658 ~ 854128 (-) True CI01000049_00848509_00854128
CI01000049_00980509_01030584.mRNA mRNA upstream 199796 980366 ~ 1030597 (-) True CI01000049_00980509_01030584
CI01000049_01197359_01206811.mRNA mRNA upstream 415108 1195678 ~ 1207195 (-) True CI01000049_01197359_01206811
CI01000049_01247902_01262425.mRNA mRNA upstream 466890 1247460 ~ 1262425 (-) True CI01000049_01247902_01262425
TU234741 other downstream 146817 632680 ~ 633195 (-) False G206850
TU234739 other downstream 146817 632692 ~ 633195 (-) True G206850
TU234735 other downstream 148436 631143 ~ 631576 (-) True G206849
TU234835 other upstream 45289 825859 ~ 827645 (-) True G206938
TU235215 other upstream 1206441 1987011 ~ 1988767 (-) True G207278
TU237643 other upstream 5247519 6028089 ~ 6028413 (-) False G209491
TU239604 other upstream 7275063 8055633 ~ 8059179 (-) False CI01000049_08056071_08059039
TU239603 other upstream 7275153 8055723 ~ 8059179 (-) True CI01000049_08056071_08059039

Expression Profile