RNA id: TU234849


Basic Information

Item Value
RNA id TU234849
length 207
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G206949
representative True

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 780774 ~ 780980 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AACAATAAATGCAACAGGCAGCCTTTTAAGTAAAAATGAATAAGAAACGATAAACTATAATACTAACCCATTTGTGCCCAAATTTTTCTGAATGATTTCATGCATATAGTCCTATTAATAGTGTCCTATGTGAACATGTTCTGCATTTATTTTCCCCAGGGTTTTTTTTTTTTTTTTCTTAAAAAATGTATTTGAATGTGCGGCAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234845 lncRNA downstream 204 780012 ~ 780570 (-) False G206948
TU234847 lncRNA downstream 472 780012 ~ 780302 (-) True G206948
TU234783 lncRNA downstream 78114 702447 ~ 702660 (-) True G206886
TU234749 lncRNA downstream 133952 646573 ~ 646822 (-) True G206857
TU234746 lncRNA downstream 138226 642349 ~ 642548 (-) True G206854
TU234833 lncRNA upstream 755 781735 ~ 796259 (-) True G206936
TU234859 lncRNA upstream 15775 796755 ~ 797602 (-) True G206959
TU234822 lncRNA upstream 41616 822596 ~ 824576 (-) True G206925
TU234872 lncRNA upstream 49210 830190 ~ 830475 (-) True G206972
TU234873 lncRNA upstream 51340 832320 ~ 832867 (-) True G206973
CI01000049_00769434_00772846.mRNA mRNA downstream 7928 769180 ~ 772846 (-) True CI01000049_00769434_00772846
CI01000049_00732479_00766646.mRNA mRNA downstream 14128 732479 ~ 766646 (-) True CI01000049_00732479_00766646
CI01000049_00720262_00721411.mRNA mRNA downstream 59363 720254 ~ 721411 (-) True CI01000049_00720262_00721411
CI01000049_00715243_00718107.mRNA mRNA downstream 61411 714971 ~ 719363 (-) True CI01000049_00715243_00718107
CI01000049_00400682_00411259.mRNA mRNA downstream 369515 400667 ~ 411259 (-) True CI01000049_00400682_00411259
CI01000049_00841319_00845716.mRNA mRNA upstream 58743 839723 ~ 845716 (-) True CI01000049_00841319_00845716
CI01000049_00848509_00854128.mRNA mRNA upstream 66678 847658 ~ 854128 (-) True CI01000049_00848509_00854128
CI01000049_00980509_01030584.mRNA mRNA upstream 199386 980366 ~ 1030597 (-) True CI01000049_00980509_01030584
CI01000049_01197359_01206811.mRNA mRNA upstream 414698 1195678 ~ 1207195 (-) True CI01000049_01197359_01206811
CI01000049_01247902_01262425.mRNA mRNA upstream 466480 1247460 ~ 1262425 (-) True CI01000049_01247902_01262425
TU234741 other downstream 147579 632680 ~ 633195 (-) False G206850
TU234739 other downstream 147579 632692 ~ 633195 (-) True G206850
TU234735 other downstream 149198 631143 ~ 631576 (-) True G206849
TU234835 other upstream 44879 825859 ~ 827645 (-) True G206938
TU235215 other upstream 1206031 1987011 ~ 1988767 (-) True G207278
TU237643 other upstream 5247109 6028089 ~ 6028413 (-) False G209491
TU239604 other upstream 7274653 8055633 ~ 8059179 (-) False CI01000049_08056071_08059039
TU239603 other upstream 7274743 8055723 ~ 8059179 (-) True CI01000049_08056071_08059039

Expression Profile