RNA id: TU234890



Basic Information


Item Value
RNA id TU234890
length 310
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G206987
representative True

Chromosome Information


Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 907459 ~ 907768 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTACAGCTGCCTTGGCCCTCTGTATGGCTGTTGGGAGCTTTGCTCAGGAAAAATGGGACACCAAAATTCATGTAATCACAACTGTGCTGATATTCAAACGAACAGGACAATTGGGAATTTGACATTCCTTATGTGACAATTATAAACCGAAAATTTAATTTTAAAAACAATATTTACTTTTTCTCTATTTTATGTCTCCAATGAAGCCTTAACAGAATTGGCATTCTCCGTTTCTGAACGCCCTGCGCATGCGCCGTGCGTGCATGGATCTGCACTACTGATATACAAGTTATTCTGGAATCTCCAATCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU234828 lncRNA downstream 40080 866010 ~ 867379 (-) True G206931
TU234878 lncRNA downstream 45940 861202 ~ 861519 (-) True G206978
TU234813 lncRNA downstream 47577 857432 ~ 859882 (-) True G206916
TU234875 lncRNA downstream 72345 834821 ~ 835114 (-) True G206975
TU234874 lncRNA downstream 73256 833981 ~ 834203 (-) True G206974
TU234894 lncRNA upstream 7105 914873 ~ 915141 (-) True G206991
TU234900 lncRNA upstream 14359 922127 ~ 922409 (-) True G206997
TU234829 lncRNA upstream 142864 1050632 ~ 1050992 (-) True G206932
TU234839 lncRNA upstream 197494 1105262 ~ 1150770 (-) True G206942
TU235034 lncRNA upstream 272056 1179824 ~ 1180057 (-) True G207124
CI01000049_00848509_00854128.mRNA mRNA downstream 53331 847658 ~ 854128 (-) True CI01000049_00848509_00854128
CI01000049_00841319_00845716.mRNA mRNA downstream 61743 839723 ~ 845716 (-) True CI01000049_00841319_00845716
CI01000049_00769434_00772846.mRNA mRNA downstream 134613 769180 ~ 772846 (-) True CI01000049_00769434_00772846
CI01000049_00732479_00766646.mRNA mRNA downstream 140813 732479 ~ 766646 (-) True CI01000049_00732479_00766646
CI01000049_00720262_00721411.mRNA mRNA downstream 186048 720254 ~ 721411 (-) True CI01000049_00720262_00721411
CI01000049_00980509_01030584.mRNA mRNA upstream 72598 980366 ~ 1030597 (-) True CI01000049_00980509_01030584
CI01000049_01197359_01206811.mRNA mRNA upstream 287910 1195678 ~ 1207195 (-) True CI01000049_01197359_01206811
CI01000049_01247902_01262425.mRNA mRNA upstream 339692 1247460 ~ 1262425 (-) True CI01000049_01247902_01262425
CI01000049_01302622_01311542.mRNA mRNA upstream 394843 1302611 ~ 1311700 (-) True CI01000049_01302622_01311542
CI01000049_01340906_01399870.mRNA mRNA upstream 433138 1340906 ~ 1399870 (-) True CI01000049_01340906_01399870
TU234835 other downstream 79814 825859 ~ 827645 (-) True G206938
TU234741 other downstream 274264 632680 ~ 633195 (-) False G206850
TU234739 other downstream 274264 632692 ~ 633195 (-) True G206850
TU234735 other downstream 275883 631143 ~ 631576 (-) True G206849
TU235215 other upstream 1079243 1987011 ~ 1988767 (-) True G207278
TU237643 other upstream 5120321 6028089 ~ 6028413 (-) False G209491
TU239604 other upstream 7147865 8055633 ~ 8059179 (-) False CI01000049_08056071_08059039
TU239603 other upstream 7147955 8055723 ~ 8059179 (-) True CI01000049_08056071_08059039
TU239618 other upstream 7543374 8451142 ~ 8453450 (-) True CI01000049_08452153_08453389

Expression Profile