RNA id: TU234668


Basic Information

Item Value
RNA id TU234668
length 470
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G206788
representative True

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 3322730 ~ 3323199 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATCGAGGGCGCATAGTGGCCGCAAAGGGGGCGCTCGCGAGCACCCTTCTGAAACCTAAAATGATGAATGGGACACCCTACAGTCTCGTGGACTTAACGGACACGTGCATGCGGCAGCCATTGTAAGTCCACAAGACCGAAAGTGCATAGAAGTGTGCCATTTGGGATACAGCCTTTCTCTCAAGTTCGTAGCGCGGACCCAGGACTGGAGTCACGTCCAGTGCGCCCAATCTCATTTCGTGGCCTAACAAAATAAAATATACAGTAGCAATTTTGCACTGTTTCATAAACCTTATTTTTCTTTTTTTTTTATTTATTATTATTTAAATGTATTACCATTTTAACGTCGCAGCTCAAAAATGAGTCCTTATCCCACTGGCAAATGCGATTTCTGACCATTGATGTGTATATGACTCAGAATGGAGTTTTATAACTCAGTTGAAGGCTGCAGAGGTCAAGTTTATTTTTTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234667 lncRNA upstream 8814 3313485 ~ 3313916 (+) True G206787
TU234526 lncRNA upstream 18642 3303800 ~ 3304088 (+) True G206658
TU234527 lncRNA upstream 217391 3103635 ~ 3105339 (+) True G206659
TU234524 lncRNA upstream 236593 3084546 ~ 3086137 (+) True G206656
TU234522 lncRNA upstream 241287 3080980 ~ 3081443 (+) True G206654
TU234669 lncRNA downstream 367 3323566 ~ 3323905 (+) True G206789
TU234685 lncRNA downstream 14380 3337579 ~ 3338144 (+) True G206805
TU234686 lncRNA downstream 14982 3338181 ~ 3338381 (+) True G206806
TU234696 lncRNA downstream 28876 3352075 ~ 3352993 (+) True G206816
TU234705 lncRNA downstream 37870 3361069 ~ 3361534 (+) True G206823
CI01000049_03292042_03304890.mRNA mRNA upstream 17629 3292042 ~ 3305101 (+) True CI01000049_03292042_03304890
CI01000049_03279568_03285640.mRNA mRNA upstream 36545 3279568 ~ 3286185 (+) True CI01000049_03279568_03285640
CI01000049_03259617_03273490.mRNA mRNA upstream 48139 3259174 ~ 3274591 (+) True CI01000049_03259617_03273490
CI01000049_03253972_03255119.mRNA mRNA upstream 67590 3253972 ~ 3255140 (+) True CI01000049_03253972_03255119
CI01000049_03247914_03248937.mRNA mRNA upstream 73679 3247914 ~ 3249051 (+) True CI01000049_03247914_03248937
CI01000049_03475307_03572415.mRNA mRNA downstream 152108 3475307 ~ 3572415 (+) True CI01000049_03475307_03572415
CI01000049_03584412_03585910.mRNA mRNA downstream 258833 3582032 ~ 3586099 (+) True CI01000049_03584412_03585910
CI01000049_03593799_03605097.mRNA mRNA downstream 270528 3593727 ~ 3606491 (+) True CI01000049_03593799_03605097
CI01000049_03631096_03632219.mRNA mRNA downstream 306178 3629377 ~ 3632370 (+) True CI01000049_03631096_03632219
CI01000049_03756695_03758838.mRNA mRNA downstream 433224 3756423 ~ 3759295 (+) True CI01000049_03756695_03758838
TU234101 other upstream 1478902 1839815 ~ 1843828 (+) True CI01000049_01840330_01843844
TU235889 other downstream 300803 3624002 ~ 3624311 (+) True G207888
TU236101 other downstream 554197 3877396 ~ 3882211 (+) True G208074
TU236272 other downstream 1150326 4473525 ~ 4473602 (+) True G208235
TU237839 other downstream 3554934 6878133 ~ 6882030 (+) True G209660
TU238078 other downstream 3895649 7297053 ~ 7297062 (+) True G209859

Expression Profile