RNA id: TU235922


Basic Information

Item Value
RNA id TU235922
length 1242
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G207917
representative True

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 3575016 ~ 3576525 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACCTTTATCTCTCTGTACTCTTTATAAATTATAAAAAATAATGTACAATTAATTTACTATGAACAATACATTATGACCTGATTACCCAGAGATTTCCCTTGCCCTGCTTGAAGTAAGCACTCTGTTCTCTTGCGCTTTTGACATTTGCACATTGCAACTTGAAGTTTGTCAAGTGGCCTCAGTGTCCCGAACATGTGTTCAGGTACAAAGAGACAGTCAAAGAATGGGGTCATACTGTATATCAGCTAATGAACATGGTAGAGTATTGTGCGTTTGTTTGTCTGGTGGAAGCGAAGGAGACTGCAAATGTGTACAGTATGTTGCCATTGAAGTTATGTGTGTATGTAGGCCTGCTGCGTTGGGAAAAAATACTTGCCAACATGCAGAGTGCTATATTGTCATGCTCTCTATATGAGAACATTTTACTGCAACCTGTTACCTCAATGTTTCTCCACTGACAATAGTTTCATAGTCGCAAGGCAAACTGATAAAATATCAGAGGTGTCTGTAGATACTGTACACCATAGCAGACTGAACAAATGTGTGCAGGTCTCAAATCTCGGTCTGAGTGGATTTGTATAAGTTTGTTCAATTTGACTGTGGTGCACAGGAGTAAGAAAATGGCTTACAGTCTTCTGAAAGGTCAGACTTTTACCACCTCGCTGACAGCCTGAGGAAGTCAATGGTTTGTGTGGCATTTTTTTTTTAAAACAGAGCAAGATAAAGCTCTCAACTCCCTACCTTGGCTCTTTTCTTGGTTATCTAAAGACTGCACATATTGCTTAGAAAAAGAACTAAACAAAAGGCAACGAAAAAAGAAACAAAGTCACATATACATATAAATATCAGGATAAATATCAGATGTGATAAACAATGTATAATAGCCATTTAAAGCTGAAGACATTCAACAGGATCCACAGTCTCTCGTTTTAGAGGCTCAGGAAGAAGCTTGATGAATAAACCAGAAAAATCTCTTAAGACACATAATTTAATACATTAAAATAGCAAATATACTATTCAAAGTTCTCAGATTTGGAGTCCAGTCAATCACAGAACTTGCAGGAAGATTGACAGATGACATCTTCATAACAATAGAATGGGGCCATTGTTCCATTGATTACTGTGGTTCCTCTGGGTAAATGGTCCAATTTTCATGGAAGCCACTCTGTTGAACGTGGAGGAACTGCAGTCGTAGTGCTTGTATGCTGCTCACTATCCTCCTCTGGTGGCCAATCAGAGAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235661 lncRNA downstream 188428 3375231 ~ 3386588 (-) True G207676
TU235788 lncRNA downstream 203705 3370937 ~ 3371311 (-) True G207794
TU235782 lncRNA downstream 221374 3353414 ~ 3353642 (-) True G207788
TU235780 lncRNA downstream 230181 3344565 ~ 3344835 (-) True G207786
TU235766 lncRNA downstream 258551 3316241 ~ 3316465 (-) True G207772
TU235951 lncRNA upstream 424 3576949 ~ 3577172 (-) True G207945
TU235952 lncRNA upstream 717 3577242 ~ 3577480 (-) True G207946
TU235975 lncRNA upstream 32323 3608848 ~ 3609197 (-) True G207969
TU235980 lncRNA upstream 37235 3613760 ~ 3613989 (-) True G207974
TU235986 lncRNA upstream 54534 3631059 ~ 3632613 (-) False G207980
CI01000049_03256991_03257622.mRNA mRNA downstream 317394 3256855 ~ 3257622 (-) True CI01000049_03256991_03257622
CI01000049_03204366_03212170.mRNA mRNA downstream 362510 3203891 ~ 3212506 (-) True CI01000049_03204366_03212170
CI01000049_03093994_03098141.mRNA mRNA downstream 476875 3093837 ~ 3098141 (-) True CI01000049_03093994_03098141
CI01000049_03081339_03089363.mRNA mRNA downstream 485653 3081009 ~ 3089363 (-) True CI01000049_03081339_03089363
CI01000049_02876185_02882477.mRNA mRNA downstream 692160 2875428 ~ 2882856 (-) True CI01000049_02876185_02882477
CI01000049_03667851_03702669.mRNA mRNA upstream 91326 3667851 ~ 3702669 (-) True CI01000049_03667851_03702669
CI01000049_03749311_03749697.mRNA mRNA upstream 171564 3748089 ~ 3752045 (-) True CI01000049_03749311_03749697
CI01000049_03782311_03782489.mRNA mRNA upstream 204886 3781411 ~ 3782489 (-) True CI01000049_03782311_03782489
CI01000049_03790418_03842410.mRNA mRNA upstream 213461 3789986 ~ 3842605 (-) True CI01000049_03790418_03842410
CI01000049_03864331_03867898.mRNA mRNA upstream 287484 3864009 ~ 3867967 (-) True CI01000049_03864331_03867898
TU235215 other downstream 1586249 1987011 ~ 1988767 (-) True G207278
TU234835 other downstream 2747371 825859 ~ 827645 (-) True G206938
TU234741 other downstream 2941821 632680 ~ 633195 (-) False G206850
TU234739 other downstream 2941821 632692 ~ 633195 (-) True G206850
TU234735 other downstream 2943440 631143 ~ 631576 (-) True G206849
TU237643 other upstream 2451564 6028089 ~ 6028413 (-) False G209491
TU239604 other upstream 4479108 8055633 ~ 8059179 (-) False CI01000049_08056071_08059039
TU239603 other upstream 4479198 8055723 ~ 8059179 (-) True CI01000049_08056071_08059039
TU239618 other upstream 4874617 8451142 ~ 8453450 (-) True CI01000049_08452153_08453389
TU239601 other upstream 4888768 8465293 ~ 8476265 (-) True G211175

Expression Profile