RNA id: TU235986



Basic Information


Item Value
RNA id TU235986
length 1555
lncRNA type antisense_over
GC content 0.44
exon number 1
gene id G207980
representative False

Chromosome Information


Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 3631059 ~ 3632808 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TGCTTTTTATCTTTATTTTTTCATTTCACATAATCTGTGACAGGATATCAACTGTGGTTTAATCTAGCACAGCTAGTTTTTCACTAGTTGCAGGAAGCTTGTTTGTTCATGCAAATGTGATGTGGGACACATTTCATTGGTAAACTGTGTGTATTTTAATTATACAGTGTGCCACTCAAATCAAAATATAATGTACCATTATTCAGAGTCTCCATTCAAATATGTCTTTCATGATTAGTTTATTATATGTGTGTGAAGCTGACAGACATCAAAACAAAACTGTTAATAATCCCATATAATCAGAGGGAAATGTGTAAATGCAGGAATGTAATGAACTTTTAATATCACAAAATATTAAGAACTTGAGTATAAAGGTTGATTTGAATTCAAAAGGTCATATCACCGAAAGTACATTTTGTGCTTCCTCCAGTCCAAACCTTATTGTAGTTAAATACTGGAAAATGCCATCAGTGGCTGTTTGCATTCTGGGAACAGACGACAGATTTTGGAGATCCGCTGTTGTTAAATTATTACTTACACACAAATATGCACAATACGTCTGCCCAGCGATTGACGGTCCCTATTATTTTTTTCTTTACATATGACATTGTGGCACAAAACTACACATTCGTGGTGCGCAAGGAATGGTAAAGGTTAGTGTCCGAGAAATGTGTTTGAATAACAGTTCCCAAAAGTGAGTCCCCTTCACTCCCTGCAAAAAACGTACTCGGTATAACTCGTCCAGATTTTGTCCTCGTTGGGGTCGTTACTCGAGTACGCGCAGGTGCCCGTGGAGCTACAAGCAACCATGTGGAAGCCCACCTCCGCCAGCCTGTCAAAGGCTTGCTCCAGGAAATTATACTTCAGGTAATACCGAGACGTGTATCTCTCTGGGAGTCTGTCGGGGTCTCTGCTCTCGTTCAGAGTCTCCCCGAAAACTTCTTTGGCGAGAGACGTTTTTCCGCACACTGTGATTCTCGCCACCCGTCGAAATTTGGCGTCCTGTTGGATGTCTCGTCCTATGGTATAGGAGCCCCTGTACCCGATTGTTATGTAGCCGGTTTTTTTCGCGTCCAGAGACGGTGAGCGAGGGCCGGTGCTGGCGATACTGGTGCCTGCGAGCGCAGCCTCCTCCGGGTCGCTCTGGCACACCTCCTCGGTGATAGAGTTCTCTTTACTGACTGCCGGTCTCAGGCGTCTCACCAGCTCTTGAAGTTGAAAATATTCTGCCTCTTTAAGAAGGCTCGCTTTCTCTTTGAAGTAATCGGGCAAAACCAGAGTCTGGTCCCGCAAGTAATCCAGAATATATCTGAACAAAAATCCGTCCCTGTCCAAAAAGAAGCGTCCTTTGCTGTCGGTGGTAAGTTCCGCGGGTTTCTTCTCACTGAACATTGTCCAGAGTAAAGAATTTGGCACGGAGAGTAAAGTTGAGTGCCGCGTAACGTAAACTTGCCCTCCGACATTGAGCTCAATAATTTCGGAGAATCGCTGTGAAGCGTCCGCGCGACTTTTATCCATCTCTGCACAGCTGCGCGAGACCTCTGGTGCAATCACG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU235980 lncRNA downstream 17070 3613760 ~ 3613989 (-) True G207974
TU235975 lncRNA downstream 21862 3608848 ~ 3609197 (-) True G207969
TU235952 lncRNA downstream 53579 3577242 ~ 3577480 (-) True G207946
TU235951 lncRNA downstream 53887 3576949 ~ 3577172 (-) True G207945
TU235922 lncRNA downstream 54534 3575016 ~ 3576525 (-) True G207917
TU236002 lncRNA upstream 8528 3641141 ~ 3641551 (-) True G207990
TU236283 lncRNA upstream 9386 3641999 ~ 3676804 (-) True G208246
TU236326 lncRNA upstream 124290 3756903 ~ 3760056 (-) True G208287
TU236368 lncRNA upstream 266990 3899603 ~ 3901382 (-) True G208318
TU236367 lncRNA upstream 267097 3899710 ~ 3901479 (-) True CI01000049_03901904_03904746
CI01000049_03256991_03257622.mRNA mRNA downstream 373437 3256855 ~ 3257622 (-) True CI01000049_03256991_03257622
CI01000049_03204366_03212170.mRNA mRNA downstream 418553 3203891 ~ 3212506 (-) True CI01000049_03204366_03212170
CI01000049_03093994_03098141.mRNA mRNA downstream 532918 3093837 ~ 3098141 (-) True CI01000049_03093994_03098141
CI01000049_03081339_03089363.mRNA mRNA downstream 541696 3081009 ~ 3089363 (-) True CI01000049_03081339_03089363
CI01000049_02876185_02882477.mRNA mRNA downstream 748203 2875428 ~ 2882856 (-) True CI01000049_02876185_02882477
CI01000049_03667851_03702669.mRNA mRNA upstream 35238 3667851 ~ 3702669 (-) True CI01000049_03667851_03702669
CI01000049_03749311_03749697.mRNA mRNA upstream 115476 3748089 ~ 3752045 (-) True CI01000049_03749311_03749697
CI01000049_03782311_03782489.mRNA mRNA upstream 148798 3781411 ~ 3782489 (-) True CI01000049_03782311_03782489
CI01000049_03790418_03842410.mRNA mRNA upstream 157373 3789986 ~ 3842605 (-) True CI01000049_03790418_03842410
CI01000049_03864331_03867898.mRNA mRNA upstream 231396 3864009 ~ 3867967 (-) True CI01000049_03864331_03867898
TU235215 other downstream 1642292 1987011 ~ 1988767 (-) True G207278
TU234835 other downstream 2803414 825859 ~ 827645 (-) True G206938
TU234741 other downstream 2997864 632680 ~ 633195 (-) False G206850
TU234739 other downstream 2997864 632692 ~ 633195 (-) True G206850
TU234735 other downstream 2999483 631143 ~ 631576 (-) True G206849
TU237643 other upstream 2395476 6028089 ~ 6028413 (-) False G209491
TU239604 other upstream 4423020 8055633 ~ 8059179 (-) False CI01000049_08056071_08059039
TU239603 other upstream 4423110 8055723 ~ 8059179 (-) True CI01000049_08056071_08059039
TU239618 other upstream 4818529 8451142 ~ 8453450 (-) True CI01000049_08452153_08453389
TU239601 other upstream 4832680 8465293 ~ 8476265 (-) True G211175

Expression Profile