RNA id: TCONS_00016087


Basic Information

Item Value
RNA id TCONS_00016087
length 1495
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id XLOC_008155
representative True

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 49033557 ~ 49035153 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cagaacttggggaagaaatatacaggggggctaataattcactcATAAATGACCGAACCGCACTACAAAATAAGGAAACTCAGCTTGTGTTCACACTGGAATCATTTATTGTTCTGTTGAAAACGTGTTGCTCAGAGTCAGCAGCATTAAAGGAAACACAGaagggttaaaaaataaaaactcaagcCCAAACCCCTCAGAAGAGTTATAAAGGCATCATAAGGCCATGATGGAAATGACAAACAAAACCTTGCATGTGTCTCTGCATAAGGGGTTTATATCTTACAATTCTCCTCAAGAGACGAGATCTGAACACAAGCGAGATCTGGAATGTGCTTTTGTGCAACagtcagaaatatatatatatatatatataacacacactcattctcacatacacactcactcacgcaCACAAATACAATCCGCATCACATTAACAcagggcttttcacacttgaaCTTGAGTGAATCCTCGGTCATAACTGTTTGTTAGTTACTAACTTATTATTAgttacacttattattattattattgttacatttCTAATTTGCAAACTGTCATGTCAGTGTCACTGATTGGATAAATGCAGCATGTGACTCGTTTACATAAACACTCTAGAGTCGTTTATCCCCATTGtgttaacatattttattaatgcctaaTAGTTTTTTTCACTTCTGAAGTTTTTTCTCACCAATTTAtgcattgtctttttttttaaacacatatgTGTAAATGTATGCAAATCTGTCATTTATATGCaacatacatttcaaaatttaatttCCATTGTTgttcacacctggatttggggatcctctgccattaTTAACTTTATAACAACTttgtgactgttcttgaatggcccagccagagtcctgacttaaacccaattgagacCTAGATATAGCTGTCCACCAATGTTTACCATCcgacctgacagaactggagaggatctacaagcaggaatggcagaggatcccccAACCCTGGTGTGAAAAACTTATTGCTTCTTTCCCAATAAGACTCACGGCTGCATTAGATCAAAGGGGGCTTCAACTAAATACTGAGCAGAGTCTGAATATGACCATGTGaaattttaatttttcttttttaataaatctgcaaaaatgtcaacatttctgtgtttctctctctctctttccctctctctctctctctctctctctctctatatatatatatatatatatatgagcaatatcacactcgtagcagtgcgatatggctgtatatcggcactggtgggaggcgtgcgttagtgTCCCCACCAGTGCcgttatacagccatatcgcactgctacgagtgtgatattgcgttcatacaacagtttgacggcataattgtgtatataaaaactaaatcaaacatggagagtctcaaaaacccttttgtatgtggaactactttcttccgcgttggattcaaatcataagctgacagttaaacagccgaGCAACCatcttacat

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0001501 skeletal system development biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0043062 extracellular structure organization biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0098803 respiratory chain complex cellular_component
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0044421 obsolete extracellular region part cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0005576 extracellular region cellular_component
GO:0005581 collagen trimer cellular_component
GO:0005615 extracellular space cellular_component
GO:0070469 respirasome cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0009055 electron transfer activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016489 lncRNA downstream 25733 49005319 ~ 49007824 (-) True XLOC_008154
TCONS_00016488 lncRNA downstream 190133 48837748 ~ 48843424 (-) True XLOC_008151
TCONS_00015900 lncRNA downstream 325484 48673253 ~ 48708073 (-) True XLOC_008148
TCONS_00016487 lncRNA downstream 325504 48665871 ~ 48708053 (-) False XLOC_008148
TCONS_00016486 lncRNA downstream 325504 48665871 ~ 48708053 (-) False XLOC_008148
TCONS_00016490 lncRNA upstream 33707 49068860 ~ 49073654 (-) True XLOC_008157
TCONS_00016491 lncRNA upstream 174617 49209770 ~ 49214604 (-) True XLOC_008160
TCONS_00016492 lncRNA upstream 300490 49335643 ~ 49336116 (-) True XLOC_008162
TCONS_00016493 lncRNA upstream 336363 49371516 ~ 49373336 (-) True XLOC_008163
TCONS_00016494 lncRNA upstream 453728 49488881 ~ 49490719 (-) True XLOC_008165
TCONS_00015904 mRNA downstream 72501 48944320 ~ 48961056 (-) True XLOC_008153
TCONS_00015903 mRNA downstream 93997 48932235 ~ 48939560 (-) True XLOC_008152
TCONS_00015902 mRNA downstream 246849 48766996 ~ 48786708 (-) True XLOC_008150
TCONS_00015901 mRNA downstream 268295 48734794 ~ 48765262 (-) True XLOC_008149
TCONS_00015899 mRNA downstream 445135 48580369 ~ 48588422 (-) True XLOC_008147
TCONS_00015905 mRNA upstream 5037 49040190 ~ 49063157 (-) False XLOC_008156
TCONS_00015907 mRNA upstream 43453 49078606 ~ 49110280 (-) True XLOC_008158
TCONS_00015908 mRNA upstream 83707 49118860 ~ 49133426 (-) True XLOC_008159
TCONS_00015909 mRNA upstream 229031 49264184 ~ 49286773 (-) True XLOC_008161
TCONS_00015910 mRNA upstream 404734 49439887 ~ 49460409 (-) True XLOC_008164
TCONS_00015898 other downstream 456857 48576584 ~ 48576700 (-) True XLOC_008146
TCONS_00015897 other downstream 683955 48349487 ~ 48349602 (-) True XLOC_008145
TCONS_00015890 other downstream 1093199 47933347 ~ 47940358 (-) True XLOC_008141
TCONS_00015889 other downstream 1150272 47862776 ~ 47883285 (-) False XLOC_008141
TCONS_00015868 other downstream 2571107 46459242 ~ 46462450 (-) False XLOC_008134
TCONS_00015906 other upstream 5038 49040191 ~ 49049888 (-) True XLOC_008156
TCONS_00015911 other upstream 719681 49754834 ~ 49754950 (-) True XLOC_008166
TCONS_00015922 other upstream 2238032 51273185 ~ 51273300 (-) True XLOC_008180
TCONS_00015923 other upstream 2717927 51753080 ~ 51753197 (-) True XLOC_008181
TCONS_00015925 other upstream 3014005 52049158 ~ 52049274 (-) True XLOC_008185

Expression Profile

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