RNA id: TU246660


Basic Information

Item Value
RNA id TU246660
length 874
lncRNA type sense_over
GC content 0.39
exon number 1
gene id CI01000051_00131867_00138611
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 130386 ~ 138790 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TACACCTAGGATGGCTTGAGGGTGAGTAAATTATGGGTCAGTTTTCATTTGTGGATGAACTATCCCTTAAACGTTACCTGAATGTCCTAATGTCGGGGTTGTCAAATCCTGCTCCTGGAAGGCCAGGAGACTCTAAATAAACACGCTGAAGCAGCTAATCAAGGTCTTCAGGCTTATTCAAAACTTCCTGACAGGTCTGTGGGAACCGGTTGACGCTAAACTCTGCAGGAAGGTGGTCCTCCAAGGAGCAGTATTGGACATTCCTGATTAATGCCTTTGAACAAGGCAAAATGTTTGTGTTACCCAAAGCTCTCTAAGAGCGTTCTGAGCCTGATTGTGGTTCATTTATCAGTGCCAAACAGACACTACTGCACCACTGCCATAGGAAGTTCTTCTTTAAGCCTGGCGCAACGTTGCATGCACTTAAGTTTACCTTGGTTGACTGTTTTGAGGTTTTATGTAATTGATCATTTTTCATTCTTCTCAACCATACTGGTGAAAATGCCTTCAAAGATCATCTTTGATCATATTGTTTTTGCTCTCAATAATTCTGGGGGATTGTGTTGCCTTTTATTGTTGTGTGTATTTTATTGATTGTGAAAAATGCCATTTGTCTGAGTTTACTTGAAGCAAAATGTTGCATAGTGGATTTTTGTGTCATGCTGAACATAGAGCTTTTATTTTTGTATGTAATTTTATTTTTTATCTCTTGAGGAATGTATTTGCCACCCTTAGCTATACTGAAGGACGACAGTAAACGTAAACCCAATTATGCAGTTAAACCTTAAAGTTGCCAAGAAATGAATGAACATTGAAATCTTTTAGGTGTGTGGTGCTTGAGTGTTTTCTTGTTATTATGCAGTGGTTTCATTAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246646 lncRNA downstream 1003 129112 ~ 129592 (-) True G217411
TU246672 lncRNA downstream 1715 128614 ~ 128880 (-) True G217430
TU246644 lncRNA downstream 32887 80788 ~ 97708 (-) False G217410
TU246645 lncRNA downstream 32887 80788 ~ 97708 (-) True G217410
TU246668 lncRNA downstream 53308 73998 ~ 77287 (-) True G217426
TU246711 lncRNA upstream 10037 141505 ~ 141743 (-) True G217468
TU246667 lncRNA upstream 26489 157957 ~ 160923 (-) True G217425
TU246716 lncRNA upstream 35718 167186 ~ 167430 (-) True G217473
TU246669 lncRNA upstream 39015 170483 ~ 170754 (-) True G217427
TU246718 lncRNA upstream 39794 171262 ~ 171494 (-) True G217475
CI01000051_00083434_00086769.mRNA mRNA downstream 43236 82720 ~ 87359 (-) True CI01000051_00083434_00086769
CI01000051_00036318_00057051.mRNA mRNA downstream 73544 36318 ~ 57051 (-) True CI01000051_00036318_00057051
CI01000051_00000977_00002147.mRNA mRNA downstream 128056 810 ~ 2539 (-) True CI01000051_00000977_00002147
CI01000051_00224709_00227613.mRNA mRNA upstream 93039 224507 ~ 227613 (-) False CI01000051_00224709_00227613
CI01000051_00262483_00263385.mRNA mRNA upstream 130973 262441 ~ 263385 (-) True CI01000051_00262483_00263385
CI01000051_00278614_00302552.mRNA mRNA upstream 146724 278192 ~ 304373 (-) False CI01000051_00278614_00302552
CI01000051_00334616_00337009.mRNA mRNA upstream 202585 334053 ~ 337197 (-) True CI01000051_00334616_00337009
CI01000051_00346827_00352024.mRNA mRNA upstream 215359 346827 ~ 352381 (-) True CI01000051_00346827_00352024
TU246734 other upstream 94323 242582 ~ 243026 (-) True G217491
TU246796 other upstream 150727 282195 ~ 282629 (-) True CI01000051_00278614_00302552
TU246745 other upstream 263763 395231 ~ 395982 (-) False CI01000051_00394082_00407612
TU246751 other upstream 269208 400676 ~ 405795 (-) True CI01000051_00394082_00407612
TU246773 other upstream 430728 567040 ~ 567155 (-) True G217528

Expression Profile