RNA id: TU246796


Basic Information

Item Value
RNA id TU246796
length 435
RNA type TUCP
GC content 0.40
exon number 1
gene id CI01000051_00278614_00302552
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 278192 ~ 304373 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGATTCTGATTTAATGGCTGTTAAAGAAAGTGCAAGCAGTTCTAAGATTAATGAAGAATTAGATAATGAAGTGGCAAATGATGACATTAGTGAATTTGATGATATGCAGGCTGAAACAAAAAAGGAAGAAGCAACTGAAGAATACACTGAGGAAGAATCAGAAGAGCAGGATGAAACAGCTTATGATGAAACTGCAGAAGAAGGGCAAACTGTGAAAATAGAATCTGTTGAGGAGGGTGAGACCACTGGTGAAGAGACTGTAGAGAACAGGCAGACTGCTGAAGCACTAGCAGATGATGAGGATGACATAGCTGGTAATGAAACTGCAGAAGAAGGTGAGACAGTTGAAGGTGAAACAGTAGAAGAGGGCAAAACATCTGAAGATGAAACTTTAGAAGATGGACAAACCCCAGAAGCAGAAACTGCTAGAGAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246658 lncRNA downstream 64040 216869 ~ 218155 (-) True G217417
TU246662 lncRNA downstream 65428 215484 ~ 216767 (-) True G217420
TU246661 lncRNA downstream 67071 214080 ~ 215124 (-) True G217419
TU246666 lncRNA downstream 68343 213614 ~ 213852 (-) True G217424
TU246665 lncRNA downstream 68825 211892 ~ 213370 (-) True G217423
TU246798 lncRNA upstream 15421 298050 ~ 298268 (-) True G217553
TU246744 lncRNA upstream 110091 392720 ~ 394242 (-) False CI01000051_00394082_00407612
TU246777 lncRNA upstream 114389 397018 ~ 397424 (-) True G217532
TU246776 lncRNA upstream 131217 413846 ~ 414972 (-) True G217531
TU246818 lncRNA upstream 145395 428024 ~ 428243 (-) True G217573
CI01000051_00262483_00263385.mRNA mRNA downstream 18810 262441 ~ 263385 (-) True CI01000051_00262483_00263385
CI01000051_00224709_00227613.mRNA mRNA downstream 54582 224507 ~ 227613 (-) False CI01000051_00224709_00227613
CI01000051_00131867_00138611.mRNA mRNA downstream 143405 130572 ~ 138790 (-) False CI01000051_00131867_00138611
CI01000051_00083434_00086769.mRNA mRNA downstream 194836 82720 ~ 87359 (-) True CI01000051_00083434_00086769
CI01000051_00036318_00057051.mRNA mRNA downstream 225144 36318 ~ 57051 (-) True CI01000051_00036318_00057051
CI01000051_00334616_00337009.mRNA mRNA upstream 51424 334053 ~ 337197 (-) True CI01000051_00334616_00337009
CI01000051_00346827_00352024.mRNA mRNA upstream 64198 346827 ~ 352381 (-) True CI01000051_00346827_00352024
CI01000051_00357855_00378052.mRNA mRNA upstream 74205 356834 ~ 378052 (-) True CI01000051_00357855_00378052
CI01000051_00383638_00388102.mRNA mRNA upstream 100693 383322 ~ 388102 (-) True CI01000051_00383638_00388102
CI01000051_00394082_00407612.mRNA mRNA upstream 110682 393311 ~ 407612 (-) False CI01000051_00394082_00407612
TU246734 other downstream 39169 242582 ~ 243026 (-) True G217491
TU246745 other upstream 112602 395231 ~ 395982 (-) False CI01000051_00394082_00407612
TU246751 other upstream 118047 400676 ~ 405795 (-) True CI01000051_00394082_00407612
TU246773 other upstream 279567 567040 ~ 567155 (-) True G217528
TU247764 other upstream 1426669 1709298 ~ 1709307 (-) True G218433
TU248069 other upstream 2244714 2527343 ~ 2546459 (-) True G218728

Expression Profile