RNA id: CI01000051_00346827_00352024.mRNA


Basic Information

Item Value
RNA id CI01000051_00346827_00352024.mRNA
length 1137
RNA type mRNA
GC content 0.51
exon number 3
gene id CI01000051_00346827_00352024
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 346827 ~ 352381 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTCTTTAATCCCTGGACACTAGAAGTTCTCATTGCTGACGCAGCATTTGCAGTGCTAAACCAGCGTAGTCAGAGCGCCGTGTCTCTGTGCTGGGAGGAATATTACTTTTGTGTTATAAATTAGGGACTCTCTGACATAGCACAGAGTGGGACAAATTAGTTGCAGTTTTCAGCAGCAAATTCAAGAGTGTTGTCACGATTTTGGTTTTTTTGGTTTGTGAAACACATTCAGAGGCATTTCGACAACTTTTTTTTTTTTTTTCTCCACCACCCCTGGCTGCTTTGGACTGTCTGCTGCAATGTGTTGGCGTCAGCGGCGATGTCTTGTTCTTCGGTTTCCTCATCGCGGCCTTTTGAATGTCCCGACGCCCCCTTCCAAGTCCAGCCCCGCTGCCGCGCCGCCCCCACCCCTCCAGAGGAGAGCGGAGCAGGAAAGAGCCCGTGGCTCCTGCTGCAGGGGCCTTATCTGAACACTGCACACAGTTCGGGGAACACATCCTCTTCCTGGGGCCTCCCATCTGCCAGGAGGAGAGAAAGAACGAAGGGAATGTGGAGGCAGAAGAAGCCAGAGAGTGTCTGAGAACATTCACGGGCCATTTTTGTTGTGTTTACACCCTCATTAGGACGTCCAAGCAGAGTCATGAAACCTGGACTTGCGTTATCTCCGTGTCAGCCTTCCTGCTTGCTTGTTTGTTTGTGTGCGTGTGCACAGCACCGGCGTGGTTTAGCGCAGGCTTCAGAGCGGGGATTCTTCACTGCAAATCATTATGCATTGAGGAGGCCATTAGCAAAATGAAGACGAATGGGAGAGAGAGTTACTGTGATAAAGAGAGCAGTGGAGCTGACTCTCAGGAGGAGAGAGCAGAGGACAGTGAAACAGTAACTAATCCAGAACCAGAGACGCAACAAAATACAGTGACCAGCACGATGACCATGCAGGAGTACTTCGCCCAGCGGATGGCCAAGATCAGGAAGGCTCAGGGAGCACGTGACCCAGCCGTGAGCACCGACACACCGTCTCCATCTGCCTCCACGGAGGACTCCCCGAACACCAGTGATATGGAACAGTCCAAAAAGAAGAAGAAAAAGGACAGAGAGAGTGATAGAAATGGCACAGAGGAAGACGAACTGACCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246798 lncRNA downstream 48559 298050 ~ 298268 (-) True G217553
TU246658 lncRNA downstream 128672 216869 ~ 218155 (-) True G217417
TU246662 lncRNA downstream 130060 215484 ~ 216767 (-) True G217420
TU246661 lncRNA downstream 131703 214080 ~ 215124 (-) True G217419
TU246666 lncRNA downstream 132975 213614 ~ 213852 (-) True G217424
TU246744 lncRNA upstream 40339 392720 ~ 394242 (-) False CI01000051_00394082_00407612
TU246777 lncRNA upstream 44637 397018 ~ 397424 (-) True G217532
TU246776 lncRNA upstream 61465 413846 ~ 414972 (-) True G217531
TU246818 lncRNA upstream 75643 428024 ~ 428243 (-) True G217573
TU246819 lncRNA upstream 76923 429304 ~ 429545 (-) True G217574
CI01000051_00334616_00337009.mRNA mRNA downstream 9630 334053 ~ 337197 (-) True CI01000051_00334616_00337009
CI01000051_00278614_00302552.mRNA mRNA downstream 42454 278192 ~ 304373 (-) False CI01000051_00278614_00302552
CI01000051_00262483_00263385.mRNA mRNA downstream 83442 262441 ~ 263385 (-) True CI01000051_00262483_00263385
CI01000051_00224709_00227613.mRNA mRNA downstream 119214 224507 ~ 227613 (-) False CI01000051_00224709_00227613
CI01000051_00131867_00138611.mRNA mRNA downstream 208037 130572 ~ 138790 (-) False CI01000051_00131867_00138611
CI01000051_00357855_00378052.mRNA mRNA upstream 4453 356834 ~ 378052 (-) True CI01000051_00357855_00378052
CI01000051_00383638_00388102.mRNA mRNA upstream 30941 383322 ~ 388102 (-) True CI01000051_00383638_00388102
CI01000051_00394082_00407612.mRNA mRNA upstream 40930 393311 ~ 407612 (-) False CI01000051_00394082_00407612
CI01000051_00478608_00478959.mRNA mRNA upstream 125849 478230 ~ 478959 (-) False CI01000051_00478608_00478959
CI01000051_00505008_00505358.mRNA mRNA upstream 152627 505008 ~ 505468 (-) True CI01000051_00505008_00505358
TU246796 other downstream 64198 282195 ~ 282629 (-) True CI01000051_00278614_00302552
TU246734 other downstream 103801 242582 ~ 243026 (-) True G217491
TU246745 other upstream 42850 395231 ~ 395982 (-) False CI01000051_00394082_00407612
TU246751 other upstream 48295 400676 ~ 405795 (-) True CI01000051_00394082_00407612
TU246773 other upstream 209815 567040 ~ 567155 (-) True G217528
TU247764 other upstream 1356917 1709298 ~ 1709307 (-) True G218433
TU248069 other upstream 2174962 2527343 ~ 2546459 (-) True G218728

Expression Profile