RNA id: CI01000051_00478608_00478959.mRNA


Basic Information

Item Value
RNA id CI01000051_00478608_00478959.mRNA
length 632
RNA type mRNA
GC content 0.42
exon number 2
gene id CI01000051_00478608_00478959
representative False

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 475707 ~ 482200 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTATAAATCCAAGTTGTTAAGCAAGTTTTTGCATCCGAGTATCCCAGATAACACTCGCATGAGAGGGGTGGAGGGGTCTGAGCAGCAACCAAGGATGGAGCTGAAGAGAAAAAAACCCTCCACCTTGTCCACTACAACCGATCTGAAGTCTGCTTGGAAAATTTCAGCAGGCACAAATGAGGTTTGTAGCAGCCCATGCGGTGAAACTTGGCATCCCATGTTAGTGTCTGCACTTATCTTGCCTGGATGCTAAACAAGGTGTCGGGACAACAAAAATGACCTCAGCCCTCACAGAGCAATTCATTCATTCTTAATCGAATCAATGAAATCTGGGGGAAAATTACCTCAGGATTGGAGGTAAACAAGTGGCTTTTTCTAGAGGTAACCCTCAGGTTTGTTCTAAGTGCACCGTATATAGGATACTGAAAAAAATTGGACATTTAATTCAATTATCTTGCACTTTAGATACCCTCATTCATTGGTTGGCACCTGGCACCCCAGTCAATGCTCAATATGTGCATCCTTGGCATGCATTCGATGGTGGCGTATAAACTTAATTCAGGCAAAAGCAACCTTTTTCTCCAATCATTTCAAAGTACATCTTCAAAAAATATTGCACACTTCAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246836 lncRNA downstream 3251 474620 ~ 474979 (-) True G217591
TU246835 lncRNA downstream 4126 473891 ~ 474104 (-) True G217590
TU246834 lncRNA downstream 4540 472640 ~ 473690 (-) True G217589
TU246833 lncRNA downstream 6166 471840 ~ 472064 (-) True G217588
TU246832 lncRNA downstream 7905 470017 ~ 470325 (-) True G217587
TU246842 lncRNA upstream 50625 529584 ~ 529784 (-) True G217597
TU246844 lncRNA upstream 53206 532165 ~ 532469 (-) True G217599
TU246853 lncRNA upstream 106260 585219 ~ 585455 (-) True G217606
TU246854 lncRNA upstream 107904 586863 ~ 587372 (-) True G217607
TU246758 lncRNA upstream 204703 683662 ~ 688527 (-) True G217513
CI01000051_00394082_00407612.mRNA mRNA downstream 70618 393311 ~ 407612 (-) False CI01000051_00394082_00407612
CI01000051_00383638_00388102.mRNA mRNA downstream 90128 383322 ~ 388102 (-) True CI01000051_00383638_00388102
CI01000051_00357855_00378052.mRNA mRNA downstream 100178 356834 ~ 378052 (-) True CI01000051_00357855_00378052
CI01000051_00346827_00352024.mRNA mRNA downstream 125849 346827 ~ 352381 (-) True CI01000051_00346827_00352024
CI01000051_00334616_00337009.mRNA mRNA downstream 141033 334053 ~ 337197 (-) True CI01000051_00334616_00337009
CI01000051_00505008_00505358.mRNA mRNA upstream 26049 505008 ~ 505468 (-) True CI01000051_00505008_00505358
CI01000051_00520062_00525658.mRNA mRNA upstream 40851 519810 ~ 525658 (-) True CI01000051_00520062_00525658
CI01000051_00560810_00563417.mRNA mRNA upstream 81809 560768 ~ 563417 (-) False CI01000051_00560810_00563417
CI01000051_00568303_00576339.mRNA mRNA upstream 88908 567867 ~ 576339 (-) True CI01000051_00568303_00576339
CI01000051_00609069_00611567.mRNA mRNA upstream 129782 608741 ~ 611567 (-) True CI01000051_00609069_00611567
TU246751 other downstream 72435 400676 ~ 405795 (-) True CI01000051_00394082_00407612
TU246745 other downstream 82248 395231 ~ 395982 (-) False CI01000051_00394082_00407612
TU246796 other downstream 195601 282195 ~ 282629 (-) True CI01000051_00278614_00302552
TU246734 other downstream 235204 242582 ~ 243026 (-) True G217491
TU246773 other upstream 83237 567040 ~ 567155 (-) True G217528
TU247764 other upstream 1230339 1709298 ~ 1709307 (-) True G218433
TU248069 other upstream 2048384 2527343 ~ 2546459 (-) True G218728
TU248216 other upstream 2361311 2840270 ~ 2840632 (-) True G218861
TU249434 other upstream 2480629 2961403 ~ 2961494 (-) True G219914

Expression Profile