RNA id: CI01000051_01809480_01841801.mRNA



Basic Information


Item Value
RNA id CI01000051_01809480_01841801.mRNA
length 2057
RNA type mRNA
GC content 0.51
exon number 16
gene id CI01000051_01809480_01841801
representative True

Chromosome Information


Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 1809480 ~ 1841801 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CATCCTGTTTGCAGACATTGTCGGGTTTACCAGTCTAGCTTCACAGTGCACGGCCCAAGAGCTGGTCAAACTCCTGAACGAGCTCTTCGGGAAATTTGATGAGCTCGCTACAGAAAACCATTGCAGGAGGATTAAGATCTTGGGAGACTGTTATTATTGCGTGTCCGGCCTGACCCAGCCCAAAGCGGACCACGCTCACTGCTGTGTGGAGATGGGTCTGGACATGATCGACACCATCACGTCTGTTGCGGAAGCGACCGAGGTGAACCTGAACATGCGTGTGGGTTTGCACACGGGCCGCGTGCTGTGCGGGGTTCTGGGGCTCCGAAAGTGGCAGTATGACGTCTGGTCCAATGACGTCACACTGGCCAACATGATGGAGGCAGGAGGACTGCCTGGGAAGGTTCATATCACCAAGGCAACGCTGGAATGTCTGAATGGAGATTACGAGGTGGAGCCGGGCTTTGGCCACGAGAGACACGCTTTCCTCAGCAAACACGCCATCGAGACGTTCTTCATCGTACCCTCACACAGACGCAAGATTTTTCCTGGGCTGATCCTATCAGACATAAAACCAGCAAAAAGGATGAAGTTTAAGACAGTCTGTTACCTGCTGGTGCAGCTCATGCACTGCAGAAAGATGTTCAAGGCTGAGATCCCTTTCTCCAACGTCATGACCTGTGAGGATGATGACAAGAGACGAGCGTTGCGAACAGCTTCTGAGAAGCTGCGTAATCGGACGTCATTTTCGGCAGGAATGGTGCAGAACTCTCCCGGGACCAGAGTGAACCGTTATATCGGCCGTCTGATAGAAGCACGGCAGACGGAGTCCGAGACGGCAGACCTCAACTACATTACCCTAACATACAGGAGCAGAGAGAGAGAGCAGAGATATCAGCAAGTGTATGACGAAGCCTTCATCAGTGCAGTGGTTATATCGCTTGTCCTCACCTCATTTTTTGCAGTGGTCTATTTTCTCATCATTCCTCAAGGTCTTCTGGTTGTGATTCTTCTGGTTCTTTGTTTGTGCTTCCACATGGCAAGTGTGATGTACCTTCACATCACTCATGTGCAGGTGGGATGTGTACCGTGGTCACTGGAGGGGAATTCCAGTGTCTCCATGGTGACAGTTGTCACAGTGAACGGGACCGCTGTGGGCTCCGGGGTGTGCAAATACACTCCGTACGTATTTTTATCATGTGTAATGGCATCTCTATCTGTGGCCCTGTACCTTCGTGTGTCATCACTACCCAAGATCCTCCTGCTTCTCCTTCTCAACATCCTCCACACTGTTGTCATGGAGACCAGTGGCTATCGGAAGGCCATAGGACAGCTGGATCTCAAACTCAGACTGGACTACCTCTGGGCCACCCAGGCTGAGGAGGAGAGAGATGACATGGAGAGAGTGAAGTTGGACAATAAGAGGATTCTGTTCAACCTGCTGCCTGCACATGTAGCTCAACACTTCCTGCTGTCCAACCCACGAAACATGGACCTGTATTATCAGTCTTACTCTCAGGTGGGCGTCCTGTTCGCCTCCATCCCCAACTTCAATGACTTCTACATTGAGCTGGATGGAAACAACATGGGTGTGGAATGCCTCCGGCTGCTAAACGAGATCATTGCTGACTTTGATGCGTTGATGGATAAGGAATGCTACAGAGACATTGAGAAGATCAAAACTATTGGCAGTACTTACATGGCTGCGGTCGGACTCGTCCCCACTGCGGGATCCAAGGTAAAGAAGTCCGTTTCTGCACACCTGTGCACAGTGGCTGATTTTGCCATCGAGATGTTTGACGTCCTGGATGCAATCAACTACCAGTCCTACAATGACTTTGTGCTTCGAGTTGGTATCAACGTGGGTCCAGTGGTTGCCGGAGTAATCGGGGCTCGTAGGCCTCAGTACGACATCTGGGGAAACACAGTCAACGTCGCCAGCAGAATGGACAGCACTGGAGTTCAGGGCAAAATACAGGTGACAGAGGATGTCTTCCGCCTACTCTCTGGTTATTATCACTTCCTGTGTCGTGGCCAGGTCAGCGTGAAGGGCAAAG

Function


GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K08041 ADCY1; adenylate cyclase 1

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU247958 lncRNA downstream 8372 1800877 ~ 1801108 (-) True G218621
TU247954 lncRNA downstream 12557 1796512 ~ 1796923 (-) True G218617
TU247950 lncRNA downstream 20584 1788326 ~ 1788896 (-) True G218613
TU247761 lncRNA downstream 23402 1784416 ~ 1786078 (-) False CI01000051_01785489_01787612
TU247805 lncRNA downstream 46569 1707837 ~ 1762911 (-) True G218471
TU247966 lncRNA upstream 22316 1864117 ~ 1864351 (-) True G218629
TU247967 lncRNA upstream 24638 1866439 ~ 1866639 (-) True G218630
TU247802 lncRNA upstream 51044 1892845 ~ 1893626 (-) True G218468
TU247978 lncRNA upstream 105808 1947609 ~ 1947949 (-) True G218641
TU247784 lncRNA upstream 111005 1952806 ~ 1954033 (-) True G218450
CI01000051_01789888_01790134.mRNA mRNA downstream 19346 1789761 ~ 1790134 (-) True CI01000051_01789888_01790134
CI01000051_01785489_01787612.mRNA mRNA downstream 21776 1784482 ~ 1787704 (-) False CI01000051_01785489_01787612
CI01000051_01716468_01720230.mRNA mRNA downstream 88572 1716459 ~ 1720908 (-) True CI01000051_01716468_01720230
CI01000051_01644907_01652696.mRNA mRNA downstream 156761 1644800 ~ 1652719 (-) True CI01000051_01644907_01652696
CI01000051_01560871_01627451.mRNA mRNA downstream 181815 1560828 ~ 1627665 (-) True CI01000051_01560871_01627451
CI01000051_01852579_01861297.mRNA mRNA upstream 10623 1852424 ~ 1861883 (-) True CI01000051_01852579_01861297
CI01000051_01894807_01902190.mRNA mRNA upstream 52518 1894319 ~ 1902190 (-) True CI01000051_01894807_01902190
CI01000051_01915943_01920786.mRNA mRNA upstream 73573 1915374 ~ 1920786 (-) True CI01000051_01915943_01920786
CI01000051_01926867_01942055.mRNA mRNA upstream 84885 1926686 ~ 1942055 (-) True CI01000051_01926867_01942055
CI01000051_01989511_02060303.mRNA mRNA upstream 147670 1989471 ~ 2060303 (-) True CI01000051_01989511_02060303
TU247764 other downstream 21720 1709298 ~ 1709307 (-) True G218433
TU246773 other downstream 1242325 567040 ~ 567155 (-) True G217528
TU246751 other downstream 1403685 400676 ~ 405795 (-) True CI01000051_00394082_00407612
TU246745 other downstream 1413498 395231 ~ 395982 (-) False CI01000051_00394082_00407612
TU246796 other downstream 1526851 282195 ~ 282629 (-) True CI01000051_00278614_00302552
TU248069 other upstream 685542 2527343 ~ 2546459 (-) True G218728
TU248216 other upstream 998469 2840270 ~ 2840632 (-) True G218861
TU249434 other upstream 1117787 2961403 ~ 2961494 (-) True G219914
TU249582 other upstream 2313929 4155730 ~ 4158103 (-) True G220041
TU251315 other upstream 3672151 5513952 ~ 5518824 (-) True G221575

Expression Profile