RNA id: CI01000051_02561929_02569617.mRNA



Basic Information


Item Value
RNA id CI01000051_02561929_02569617.mRNA
length 1998
RNA type mRNA
GC content 0.38
exon number 4
gene id CI01000051_02561929_02569617
representative True

Chromosome Information


Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 2561077 ~ 2570235 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGAGTTTTTTCACGTCATATCACACGTGGTGTCAAGTGCCTTTTGGAGCAGGAGCCTCCTGCTGTCTGTAGGTTTCACCCAGCTGATAGCTGCGGCCCGGGGAGATTAACCTATATCTGTTAGCACTAACCCTCATGCTCCTCATCGTTGCAATTGTATTTACTCATTAGGCGTCATAGAAACAATGCTGAAGAGTTAATTAGAGAGCGAGCAGCTTGCATTCTGCCTTCTCTGACCCAGTTCTTTTTCCTTCTCTCCTCCTCCCTCCCTCTTTTTCTTCTTCTTCCTTGTCTCTATCCTGGTTAATGAGCGCACTTCATGGTATGAAATGGTTGCATGATTATTTTCACATGATTCTGACTGAGTCGTGATTAAAAGGCAATTTCTTCCTTTTGTGTGCTCGTTCATTCTGTAAACGTCAGGACTCGGGTTTGATTTCTCTGCTTTTCATCCAGAGAAATGTGAGAATGTGTTTATAATAAGGCTTTGCTGCACCAAATGGAGGTCGTAATGCAGTGTGAATGATAATAGTGGTCAACCTAGGTCATAACATTCTTCTTAGATGGCTAAAAAACTCACTGTGATCTGTCGAGAAGTGTTTGGCAGACCAATGAGGTGATGTCCACACCAGTCTTTTCATCCTTAATGACTTACTTTGCCATACCTTCCTCCTGTCCCATGACTCCTGGCTTTGCCTTAATAATGATCTCACACCAGCATGGGTGTGATCAGGGCCGATATGGCATTCTAATGAAAGGCCAGGAGAATTTCTCAAAGGTTGGAGTAATGGGTGACTTGACAGGCTCTTTATGTAACAATCATAGGTGGATTTTGGGAGGCAGGGTATTTTACCCACCACTTTTGAGCTTTATTATGGAAACCAGATGTGGAGAAGCAGTGCCAAGTTCTTTAGCTCAAGAAGAGTTGACAGGGAGGGATGGCGGGAAGAAAGTGGGAGGATGGGCTGCTATATGCTTGGATGGTGGAGAGGGGGAGGGGTGCGCTGGATTAAAATCTTGGTCGAAAACATCCGCATTAAAAAACAGAGGCAATGAAATAAACATCCCACCACCGAATGAGAAGACAAGTAGAGATAGCAGAGAGAGAAAATGGTCTGTAAAAGATGAGCAGAAATGGGGAAAATGAGAAAAGTGAGTCAGAGTGAAGTGAAATCAACTGAAAACAGGACATGGATTCTGTGGAGGGAAAACTGGTGATGAGATTCTGGCAGCAAAATGAGTTTAGAACAACAAAACCCTCCACCAAACCACAAAGAGAGAGATAAAGAGAGAAAGGGTAATGGTAATGTAGTACATATTATGTATTGAGACACATATAAAACAAACAGATGTACAAAAAAACTTAATATCAGCACACAGGCTTTTCCAGCTGTCTGTGATTACTGGATAAGAATTTTAAAAATCATTTTAAAGCGATTGCGCTCACAAAGTACAACCTTTCAGATATTCAGAGCTTAGCACAATGAGAAAAAATGTACTTACTGTGGAAATATAATATGATTTTTAAAGATTTTATTAATTTCACCTGTCCCACCAGCAAATTATATATATATATATATATATTTGTTTGTTTGCCATTAAAAATAACTAAACACCCTTGAAAACAAGCTTAATTTGCCTGGTCTGCATGAAAGCATGAGATGTTAAGAATGTTTTTCAGGTAAAGTTTTTTAAAAATTAATTTTAATTTAAATGTAATTTATTGCTGTGATGCAAAGCTGAATTGTCAGCATCATTACTCCAGTCTTCAGTGTCACATGATCCTTCAGAAATCATTCTAATATGCTGATTTGGTGCTGAAGTAACATCTCTTATTATTATCAATGTTGAAAATGGGTGTGATGTTTAATATTTTTATGAAAGCCTTTACATTTTTTTCAGGAGTCTTTGATGAAAGGTCAAAAGAATAGCATTTATTTGAAACAGAATTTTTTTGTAACAATTTACAAGTTCCACTATCACTTCATTGCTGAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU248106 lncRNA downstream 34899 2490790 ~ 2526178 (-) True G218765
TU248169 lncRNA downstream 37502 2522859 ~ 2523575 (-) True G218823
TU248089 lncRNA downstream 165300 2392411 ~ 2395777 (-) True G218748
TU248057 lncRNA downstream 206933 2350481 ~ 2354144 (-) True G218716
TU248075 lncRNA downstream 244351 2312097 ~ 2316726 (-) True G218734
TU248176 lncRNA upstream 8742 2578977 ~ 2579265 (-) True G218829
TU248178 lncRNA upstream 12976 2583211 ~ 2583426 (-) True G218831
TU248196 lncRNA upstream 114504 2684739 ~ 2684995 (-) True G218848
TU248236 lncRNA upstream 304388 2874623 ~ 2874876 (-) True G218881
TU249480 lncRNA upstream 332802 2903037 ~ 2903280 (-) True G219958
CI01000051_02391113_02451758.mRNA mRNA downstream 109319 2389882 ~ 2451758 (-) True CI01000051_02391113_02451758
CI01000051_02362692_02367269.mRNA mRNA downstream 193808 2361767 ~ 2367269 (-) True CI01000051_02362692_02367269
CI01000051_02359343_02360115.mRNA mRNA downstream 200962 2359091 ~ 2360115 (-) True CI01000051_02359343_02360115
CI01000051_02297468_02301682.mRNA mRNA downstream 258683 2296901 ~ 2302394 (-) False CI01000051_02297468_02301682
CI01000051_02148607_02152701.mRNA mRNA downstream 407652 2148469 ~ 2153425 (-) True CI01000051_02148607_02152701
CI01000051_02918395_02918916.mRNA mRNA upstream 348081 2918316 ~ 2918916 (-) True CI01000051_02918395_02918916
CI01000051_02920005_02939882.mRNA mRNA upstream 349222 2919457 ~ 2939882 (-) True CI01000051_02920005_02939882
CI01000051_02941319_02952102.mRNA mRNA upstream 371077 2941312 ~ 2952102 (-) True CI01000051_02941319_02952102
CI01000051_02955633_02960400.mRNA mRNA upstream 385145 2955380 ~ 2961148 (-) False CI01000051_02955633_02960400
CI01000051_02966203_03000592.mRNA mRNA upstream 393936 2964171 ~ 3000592 (-) True CI01000051_02966203_03000592
TU248069 other downstream 14618 2527343 ~ 2546459 (-) True G218728
TU247764 other downstream 773317 1709298 ~ 1709307 (-) True G218433
TU246773 other downstream 1993922 567040 ~ 567155 (-) True G217528
TU246751 other downstream 2155282 400676 ~ 405795 (-) True CI01000051_00394082_00407612
TU246745 other downstream 2165095 395231 ~ 395982 (-) False CI01000051_00394082_00407612
TU248216 other upstream 270035 2840270 ~ 2840632 (-) True G218861
TU249434 other upstream 389353 2961403 ~ 2961494 (-) True G219914
TU249582 other upstream 1585495 4155730 ~ 4158103 (-) True G220041
TU251315 other upstream 2943717 5513952 ~ 5518824 (-) True G221575
TU251621 other upstream 3562538 6132773 ~ 6133579 (-) True G221840

Expression Profile