RNA id: TCONS_00001304


Basic Information

Item Value
RNA id TCONS_00001304
length 764
RNA type processed_transcript
GC content 0.53
exon number 5
gene id XLOC_000813
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 57347888 ~ 57365052 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCTGCGCTTGCGCTCATACCTACACGAGCAACAGAGCCGAAACCAAAACACGAGCAATTATTCACCTCATTTAACTAGTATTGAAGCAGAATGAGCGCTTATCCTGGATAATGTATGTTGGACGCAAGCATTGGGCACACGTAGGCGAGTGTGTTTGAGAGATGAGCGGGAAACAGGAGCTCAGCGGAGGCTCTGAACCGGAGCCAAAGCGCTTCTGCGAGCGGAGTGGCTGTCATGGCGGCGGGGAACCAGCAGAGGGCGACAGCGACACAGTGtcagTGATCATGCCGGTGTTTAATGCGTCTGATTGGCTGGACGAGTGTCTGCAAGCGATATTGGAGCAGGATTTCCAGGGTCGTATGGAGCTGTGTGTGTTTGACGACGGCAGtacggacgGCTCCAGGGAGCTGGTGGAGAGATGGAGACCGAAGTTCGAGGACAGAGGCATTTCAGTGCTGATATCTGGACACAAATCCTCCAGCCCAcgcggagTGGGATATGCCAAAAACCAGGCTGTGAGTCAGAGCTCGGGACGATTCCTCTGCTTTCAGGAtgcgATTCCCAGCGTTCCTGCAAACCTCACTGAGAGCTGATTCTGTCCGTCTGGAAAAGCAGAGCAGGGAAAACCCCTCAGAAATCACTGAACTGTAAAGCAGaccagaggaaacacacagaaTTGGAGTTACAGCGCTCAGAGCAcagcaggaacacacacacacacacaccctgtggCTTAATgtacactaaaacacacacacacaca

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050913-133 Predicted to enable glycosyltransferase activity. Orthologous to human B3GNTL1 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase like 1).

Ensembl:

ensembl_id ENSDART00000143018

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003259 lncRNA upstream 107654 57238434 ~ 57240244 (+) True XLOC_000802
TCONS_00003258 lncRNA upstream 110292 57237308 ~ 57237606 (+) False XLOC_000802
TCONS_00003257 lncRNA upstream 132944 57214293 ~ 57214954 (+) True XLOC_000809
TCONS_00003256 lncRNA upstream 228839 57116265 ~ 57119059 (+) False XLOC_000801
TCONS_00003255 lncRNA upstream 302384 57044496 ~ 57045514 (+) True XLOC_000799
TCONS_00003260 lncRNA downstream 53634 57408667 ~ 57436117 (+) True XLOC_000815
TCONS_00003261 lncRNA downstream 64315 57419348 ~ 57433416 (+) False XLOC_000816
TCONS_00002887 lncRNA downstream 64337 57419370 ~ 57429115 (+) True XLOC_000816
TCONS_00002888 lncRNA downstream 186083 57541116 ~ 57565236 (+) False XLOC_000818
TCONS_00002889 lncRNA downstream 207809 57562842 ~ 57565236 (+) True XLOC_000818
TCONS_00001302 mRNA upstream 7706 57331829 ~ 57340192 (+) True XLOC_000812
TCONS_00001301 mRNA upstream 13093 57331813 ~ 57334805 (+) False XLOC_000812
TCONS_00001299 mRNA upstream 30101 57269441 ~ 57317797 (+) False XLOC_000811
TCONS_00001300 mRNA upstream 30527 57311901 ~ 57317371 (+) True XLOC_000811
TCONS_00001298 mRNA upstream 109434 57235896 ~ 57238464 (+) False XLOC_000802
TCONS_00001306 mRNA downstream 16414 57371447 ~ 57382010 (+) False XLOC_000814
TCONS_00001307 mRNA downstream 16522 57371555 ~ 57381847 (+) True XLOC_000814
TCONS_00001308 mRNA downstream 166328 57521361 ~ 57533548 (+) True XLOC_000817
TCONS_00001309 mRNA downstream 369124 57724157 ~ 57757768 (+) False XLOC_000820
TCONS_00001310 mRNA downstream 386544 57741577 ~ 57743393 (+) True XLOC_000821
TCONS_00001233 other upstream 2050647 55293625 ~ 55297251 (+) False XLOC_000739
TCONS_00001221 other upstream 2219319 55128465 ~ 55128579 (+) True XLOC_000733
TCONS_00001186 other upstream 3161742 54186039 ~ 54186156 (+) True XLOC_000710
TCONS_00001180 other upstream 3286688 54053104 ~ 54061210 (+) True XLOC_000705
TCONS_00001166 other upstream 3960017 53387765 ~ 53387881 (+) True XLOC_000690
TCONS_00001335 other downstream 805118 58160151 ~ 58173589 (+) True XLOC_000837
TCONS_00001394 other downstream 1776259 59131292 ~ 59131406 (+) True XLOC_000888

Expression Profile

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