RNA id: CI01000051_05969849_05970699.mRNA



Basic Information


Item Value
RNA id CI01000051_05969849_05970699.mRNA
length 1391
RNA type mRNA
GC content 0.51
exon number 2
gene id CI01000051_05969849_05970699
representative True

Chromosome Information


Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 5969849 ~ 5971469 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGGATGATGACGCACCAGGTCGTGCTAAAAAGAAAAAGACGTATTACTTTAACAAGGAGTGGGAGACAGAATTCCTCTTCACAAATGTCAAAGATAAAGCTGTATGCCTCATCTGTGGAGCTAACATAGCGGTAGCCAAGAGACACAATGCAGAGGGACATTTTGCCACAACCCACAAGATCGTCAATGGCCATTATCCAGCAGTCATGGCTATGTCAGTGAACATAATGGAGCAGCTGGAGAAAGACTTGGGTTTGTGCAAATGGTTTTCCATCCAGTGTGTTGAGTGTGTGGATTCTAGTAGTACAGAACAGCTCATGGTTTTCCTCAGAATGGTTTTCAGTGATTTTTCAGTGAAAGAGGAATTTCTGACATTGCTGCCCCTCAAGACAACAACAAGGGGTGTTGATATTTATGATGCAATGAAGTACTTCATGGACAAAAATGTGCCATTTGAAAAGTTGGTATCGGTAACAACTGATGGAGCCCCTGCAATGACTGACCAGCCTACAGGATTCATTGCGCTATGCAGAGGAAACCCAGATTTTCCAAAGTTTCTACATTACTACTGCATTATTGTCTGCTGGTGTATGTGCGCCAAAGCAATGGGATTTGAGTAGCCATTCTTCCCGGAGGTGCATGAGGAGGTTCAGAAGACGTGGAAGGCACCTTTTACTGCCAGGAACTGTTCTTCTGTGTCCTCCACTCTCACTACCCTCGATGGTGGGGCCGTCAAGGGTTACGTGGACATTCCACAGGTGGAGCATGCAATTGTGGTGCACTTGTGCCCACAGTCTGCTGCCACCTGGCGGAATCGTCCGCATCTACCGTCCAAGGCAAGATGATGGCAGCTCTGGCCGCTAAGGCTTACTCTGCTGCCGGATAGGCCATGCCATGGCCATCCTGCAGGTCCATCAGACAAAAGCTCTGAAAGATCTGCACAAGGGTAGTTCTGAGCCAGGGTTGTTGCAAGAACCAATCGTCTGGCCAAGGGCCCGCGCCGTGACTTTCGTCGCTCGGAGCGGGCCCTTGGCCAGACGATATCCACCCTGGTGGTCCAGGAGCATCACCTTTGGTTGGACCTGGCTGAAATGAAGGACGCCGACAAAGTTCGCTTTCTCGATGCCCCCATTTCCCAGGCTGGCCTCTTTGGCGACACTGTTGAGTTGCCCAGCAGTTCTCGGCAGTCCAGAAGCAGACGGAGGCCATAAAGCACATCTTGCCTCGGTGTGACACTGCCACCGTTCCGTTGCCCCCCCCCCGAGACGGGTGGCCCAGAGATGGAGGGGACTGCTCTGTCCCAGGAGAAGGTGAAAGCACAGCTTCTTCCCCTGGGAGAGAGCCAGTTGGAAAATCCTGTGTTCAGTTTTATTTCTGTCCCACCTTTTCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU250569 lncRNA upstream 23505 5945590 ~ 5946344 (+) True G220920
TU250572 lncRNA upstream 139743 5789528 ~ 5830106 (+) True G220923
TU250559 lncRNA upstream 225384 5741058 ~ 5744465 (+) True G220916
TU250579 lncRNA upstream 229678 5739579 ~ 5740171 (+) True G220930
TU250571 lncRNA upstream 292886 5676464 ~ 5676963 (+) True G220922
TU250649 lncRNA downstream 18337 5989806 ~ 5990114 (+) True G220983
TU250633 lncRNA downstream 43704 6015173 ~ 6016182 (+) True G220967
TU250659 lncRNA downstream 47852 6019321 ~ 6019757 (+) False G220991
TU250657 lncRNA downstream 47967 6019436 ~ 6019757 (+) False G220991
TU250661 lncRNA downstream 47967 6019436 ~ 6019978 (+) True G220991
CI01000051_05955881_05966250.mRNA mRNA upstream 3424 5955417 ~ 5966425 (+) True CI01000051_05955881_05966250
CI01000051_05935542_05939529.mRNA mRNA upstream 30217 5935443 ~ 5939632 (+) True CI01000051_05935542_05939529
CI01000051_05831209_05933202.mRNA mRNA upstream 36212 5831209 ~ 5933637 (+) True CI01000051_05831209_05933202
CI01000051_05757566_05757955.mRNA mRNA upstream 211708 5757566 ~ 5758141 (+) True CI01000051_05757566_05757955
CI01000051_05712567_05728993.mRNA mRNA upstream 240158 5712567 ~ 5729691 (+) True CI01000051_05712567_05728993
CI01000051_05996289_06007664.mRNA mRNA downstream 24526 5995995 ~ 6008558 (+) True CI01000051_05996289_06007664
CI01000051_06113450_06128623.mRNA mRNA downstream 141981 6113450 ~ 6129084 (+) True CI01000051_06113450_06128623
CI01000051_06136031_06140543.mRNA mRNA downstream 164562 6136031 ~ 6140633 (+) True CI01000051_06136031_06140543
CI01000051_06155906_06164505.mRNA mRNA downstream 184437 6155906 ~ 6164505 (+) True CI01000051_06155906_06164505
CI01000051_06167413_06171890.mRNA mRNA downstream 195734 6167203 ~ 6172507 (+) True CI01000051_06167413_06171890
TU249310 other upstream 917816 5018305 ~ 5052033 (+) False G219803
TU249308 other upstream 920039 4914974 ~ 5049810 (+) False G219803
TU249297 other upstream 920039 4944958 ~ 5049810 (+) False G219803
TU249302 other upstream 920039 4959429 ~ 5049810 (+) False G219803
TU249300 other upstream 920039 5045115 ~ 5049810 (+) False G219803
TU250885 other downstream 854330 6825799 ~ 6833068 (+) True G221187
TU251039 other downstream 1370572 7342041 ~ 7342546 (+) True G221319
TU251108 other downstream 1438054 7409523 ~ 7413007 (+) True G221386
TU251044 other downstream 2134174 8105643 ~ 8128075 (+) True G221324
TU252626 other downstream 2371473 8342942 ~ 8343448 (+) True G222727

Expression Profile